def __init__(self, *args, **kwargs):
RunApp.__init__(self, *args, **kwargs)
self.moose_dir = os.environ.get(
'MOOSE_DIR',
os.path.abspath(
os.path.join(os.path.dirname(os.path.realpath(__file__)),
'..')))
if os.environ.get("LIBMESH_DIR"):
self.libmesh_dir = os.environ['LIBMESH_DIR']
else:
self.libmesh_dir = os.path.join(self.moose_dir, 'libmesh',
'installed')
if self.specs['turn_off_exodus_output']:
self.specs['cli_args'][:0] = ['Outputs/exodus=false']
if list(map(int,
util.getPetscVersion(
self.libmesh_dir).split("."))) < [3, 9]:
self.old_petsc = True
self.specs['cli_args'].extend(
['-snes_type test', '-snes_mf_operator 0'])
else:
self.old_petsc = False
self.specs['cli_args'].extend(
['-snes_test_jacobian', '-snes_force_iteration'])
if not self.specs['run_sim']:
self.specs['cli_args'].extend([
'-snes_type', 'ksponly', '-ksp_type', 'preonly',
'-pc_type', 'none', '-snes_convergence_test', 'skip'
])
def __init__(self, *args, **kwargs):
RunApp.__init__(self, *args, **kwargs)
if (self.specs.isValid("expect_err") == False
and self.specs.isValid("expect_assert") == False):
raise RuntimeError(
'Either "expect_err" or "expect_assert" must be supplied in RunException'
)
def validParams():
params = RunApp.validParams()
params.addParam('ratio_tol', 1e-8,
"Relative tolerance to compare the ration against.")
params.addParam(
'difference_tol', 1e-8,
"Relative tolerance to compare the difference against.")
params.addParam(
'state', 'user',
"The state for which we want to compare against the "
"finite-differenced Jacobian ('user', 'const_positive', or "
"'const_negative'.")
params.addParam(
'run_sim', False,
"Whether to actually run the simulation, testing the Jacobian "
"at every non-linear iteration of every time step. This is only "
"relevant for petsc versions >= 3.9.")
params.addParam('turn_off_exodus_output', True,
"Whether to set exodus=false in Outputs")
# override default values
params.setDefault('valgrind', 'NONE')
params.setDefault('petsc_version', ('>=3.9.4', ))
params.setDefault('method', 'OPT')
return params
def validParams():
params = RunApp.validParams()
params.addParam(
'gold_dir', 'gold',
"The directory where the \"golden standard\" files reside relative to the TEST_DIR: (default: ./gold/)"
)
params.addParam('abs_zero', 1e-10,
"Absolute zero cutoff used in exodiff comparisons.")
params.addParam('rel_err', 5.5e-6,
"Relative error value used in exodiff comparisons.")
return params
def validParams():
params = RunApp.validParams()
params.add('jsondiff',
vtype=str,
array=True,
required=True,
doc="A list of XML files to compare.")
params.addParam(
'gold_dir', 'gold',
"The directory where the \"golden standard\" files reside relative to the TEST_DIR: (default: ./gold/)"
)
params.addParam('skip_keys', [],
"A list of keys to skip in the JSON comparison")
return params
def validParams():
params = RunApp.validParams()
#params.addParam('expect_err', "A regular expression or literal string that must occur in the output (see match_literal). (Test may terminate unexpectedly and be considered passing)")
params.addParam(
'expect_assert',
"DEBUG MODE ONLY: A regular expression that must occur in the output. (Test may terminate unexpectedly and be considered passing)"
)
#params.addParam('should_crash', True, "Inidicates that the test is expected to crash or otherwise terminate early")
params.set('should_crash', True)
# RunException tests executed in parallel need to have their output redirected to a file, and examined individually
params['redirect_output'] = True
return params
def validParams():
params = RunApp.validParams()
# Input is optional in the base class. Make it required here
# params.addRequiredParam('input', "The python input file to use for this test.")
params.addParam(
'test_case',
"The specific test case to run (Default: All test cases in the module)"
)
params.addParam(
'buffer', False,
"Equivalent to passing -b or --buffer to the unittest.")
params.addParam('separate', False,
"Run each test in the file in a separate subprocess")
# We don't want to check for any errors on the screen with unit tests
params['errors'] = tuple()
params['valgrind'] = 'NONE'
params['recover'] = False
return params
def validParams():
params = RunApp.validParams()
params.add('xmldiff',
vtype=str,
array=True,
required=True,
doc="A list of XML files to compare.")
params.addParam(
'gold_dir', 'gold',
"The directory where the \"golden standard\" files reside relative to the TEST_DIR: (default: ./gold/)"
)
params.addParam('abs_zero', 1e-10,
"Absolute zero cutoff used in exodiff comparisons.")
params.addParam('rel_err', 5.5e-6,
"Relative error value used in exodiff comparisons.")
params.addParam(
'ignored_attributes', [],
"Ignore e.g. type and/or version in sample XML block <VTKFile type=\"Foo\" version=\"0.1\">"
)
return params
def __init__(self, *args, **kwargs):
RunApp.__init__(self, *args, **kwargs)
def checkRunnable(self, options):
if options.enable_recover:
self.addCaveats('PetscJacTester RECOVER')
self.setStatus(self.skip)
return False
return RunApp.checkRunnable(self, options)
def checkRunnable(self, options):
if options.enable_recover:
self.addCaveats('type=RunException')
self.setStatus(self.skip)
return False
return RunApp.checkRunnable(self, options)