def __initClassDatabase(self):
"""Initialize the class database for faster searching."""
# Do nothing if the syntax failed to build
if self._app_syntax is None:
return
start = time.time()
LOG.info("Building MOOSE class database...")
self._database = common.build_class_database(self['includes'], self['inputs'])
# Cache the syntax entries, search the tree is very slow
self._cache = dict()
self._object_cache = dict()
self._syntax_cache = dict()
for node in moosetree.iterate(self._app_syntax):
if not node.removed:
self._cache[node.fullpath] = node
if node.alias:
self._cache[node.alias] = node
if isinstance(node, syntax.ObjectNode):
self._object_cache[node.fullpath] = node
if node.alias:
self._object_cache[node.alias] = node
elif isinstance(node, syntax.SyntaxNode):
self._syntax_cache[node.fullpath] = node
if node.alias:
self._syntax_cache[node.alias] = node
LOG.info("MOOSE class database complete [%s sec]", time.time() - start)
def testBreadthFirst(self):
root = build_tree()
nodes = list(moosetree.iterate(root))
self.assertEqual(len(nodes), 29)
self.assertEqual(nodes[0].name, 'A')
self.assertEqual(nodes[1].name, 'B')
self.assertEqual(nodes[2].name, 'C')
self.assertEqual(nodes[3].name, 'D')
self.assertEqual(nodes[4].name, 'AA')
self.assertEqual(nodes[5].name, 'AB')
self.assertEqual(nodes[6].name, 'AC')
self.assertEqual(nodes[7].name, 'BA')
self.assertEqual(nodes[8].name, 'BB')
self.assertEqual(nodes[9].name, 'BC')
self.assertEqual(nodes[10].name, 'BD')
self.assertEqual(nodes[11].name, 'CA')
self.assertEqual(nodes[12].name, 'CB')
self.assertEqual(nodes[13].name, 'CC')
self.assertEqual(nodes[14].name, 'DA')
self.assertEqual(nodes[15].name, 'DB')
self.assertEqual(nodes[16].name, 'ABA')
self.assertEqual(nodes[17].name, 'ABB')
self.assertEqual(nodes[18].name, 'ABC')
self.assertEqual(nodes[19].name, 'ABD')
self.assertEqual(nodes[20].name, 'BAA')
self.assertEqual(nodes[21].name, 'BAB')
self.assertEqual(nodes[22].name, 'CCA')
self.assertEqual(nodes[23].name, 'CCB')
self.assertEqual(nodes[24].name, 'CCC')
self.assertEqual(nodes[25].name, 'ABCA')
self.assertEqual(nodes[26].name, 'ABCB')
self.assertEqual(nodes[27].name, 'ABCAA')
self.assertEqual(nodes[28].name, 'ABCAB')
def postTokenize(self, page, ast):
labels = dict()
count = 0
func = lambda n: (n.name == 'Equation') and (n['label'] is not None)
for node in moosetree.iterate(ast, func):
count += 1
node['number'] = count
labels[node['label']] = (count, node['bookmark'])
# TODO: When !eqref is used for references, this should be removed
core.Shortcut(ast,
key=node['label'],
string='{} ({})'.format(self.get('prefix'), count),
link='#{}'.format(node['bookmark']))
page['labels'] = labels
renderer = self.translator.renderer
if common.has_tokens(ast, 'Equation') and isinstance(renderer, renderers.HTMLRenderer):
renderer.addCSS('katex', "contrib/katex/katex.min.css", page)
renderer.addCSS('katex_moose', "css/katex_moose.css", page)
renderer.addJavaScript('katex', "contrib/katex/katex.min.js", page, head=True)
if self.get('macros', None):
mc = ','.join('"{}":"{}"'.format(k, v) for k, v in self.get('macros').items())
self.setAttribute('macros', '{' + mc + '}')
def postTokenize(self, page, ast):
"""Set float number for each counter."""
counts = collections.defaultdict(int)
floats = dict()
for node in moosetree.iterate(ast, lambda n: n.name == 'FloatCaption'):
prefix = node.get('prefix', None)
if prefix is not None:
counts[prefix] += 1
node['number'] = counts[prefix]
key = node.get('key')
if key:
floats[key] = node.copy()
shortcut = core.Shortcut(ast.root,
key=key,
link='#{}'.format(key))
# TODO: This is a bit of a hack to get Figure~\ref{} etc. working in general
if isinstance(self.translator.renderer, LatexRenderer):
shortcut['prefix'] = prefix.title()
else:
tokens.String(shortcut,
content='{} {}'.format(
prefix.title(), node['number']))
page['counts'] = counts
page['floats'] = floats
def testPreOrder(self):
root = build_tree()
nodes = list(moosetree.iterate(root, method=moosetree.IterMethod.PRE_ORDER))
self.assertEqual(len(nodes), 29)
self.assertEqual(nodes[0].name, 'A')
self.assertEqual(nodes[1].name, 'AA')
self.assertEqual(nodes[2].name, 'AB')
self.assertEqual(nodes[3].name, 'ABA')
self.assertEqual(nodes[4].name, 'ABB')
self.assertEqual(nodes[5].name, 'ABC')
self.assertEqual(nodes[6].name, 'ABCA')
self.assertEqual(nodes[7].name, 'ABCAA')
self.assertEqual(nodes[8].name, 'ABCAB')
self.assertEqual(nodes[9].name, 'ABCB')
self.assertEqual(nodes[10].name, 'ABD')
self.assertEqual(nodes[11].name, 'AC')
self.assertEqual(nodes[12].name, 'B')
self.assertEqual(nodes[13].name, 'BA')
self.assertEqual(nodes[14].name, 'BAA')
self.assertEqual(nodes[15].name, 'BAB')
self.assertEqual(nodes[16].name, 'BB')
self.assertEqual(nodes[17].name, 'BC')
self.assertEqual(nodes[18].name, 'BD')
self.assertEqual(nodes[19].name, 'C')
self.assertEqual(nodes[20].name, 'CA')
self.assertEqual(nodes[21].name, 'CB')
self.assertEqual(nodes[22].name, 'CC')
self.assertEqual(nodes[23].name, 'CCA')
self.assertEqual(nodes[24].name, 'CCB')
self.assertEqual(nodes[25].name, 'CCC')
self.assertEqual(nodes[26].name, 'D')
self.assertEqual(nodes[27].name, 'DA')
self.assertEqual(nodes[28].name, 'DB')
def processLatexOutput(output, nodes):
"""Convert the pdfLatex log into a tree structure to capture the warnings.
Inputs:
output[str]: The console output or the pdflatex log.
content[list]: The list of page objects from the translator.
"""
# Items for capturing errors
warn = collections.namedtuple('LatexWarning', 'content line')
line_re = re.compile(r'line\s(?P<line>[0-9]+)')
regex = re.compile(r'^(?P<filename>\.*[^\.]+\.\w+)(?P<content>.*)',
flags=re.MULTILINE|re.DOTALL)
# Convert output to a tree structure
root = PDFExtension.parseOutput(output)
# Loop through the result and capture filenames and warnings
for n in moosetree.iterate(root):
match = regex.search(n['content'])
if match:
n['content'] = match.group('content')
n['filename'] = match.group('filename').replace('\n', '')
n['content'] = [c.strip().replace('\n', '') for c in re.split(r'\n{2,}', n['content']) if c]
for c in n['content']:
if 'LaTeX Warning' in c:
c = c.replace('LaTeX Warning:', '').strip()
match = line_re.search(c)
line = int(match.group('line')) if match else None
n['warnings'].append(warn(content=c, line=line))
return root
def _addRequirement(self, parent, info, page, req):
reqname = "{}:{}".format(req.path, req.name) if req.path != '.' else req.name
item = SQARequirementMatrixItem(parent, label=req.label, reqname=reqname)
self.reader.tokenize(item, req.text, page, MarkdownReader.INLINE, info.line, report=False)
for token in moosetree.iterate(item):
if token.name == 'ErrorToken':
msg = common.report_error("Failed to tokenize SQA requirement.",
req.filename,
req.text_line,
req.text,
token['traceback'],
'SQA TOKENIZE ERROR')
LOG.critical(msg)
p = core.Paragraph(item)
tokens.String(p, content='Specification: ')
content = common.read(req.filename)
floats.create_modal_link(p,
string=reqname,
content=core.Code(None, language='text', content=content),
title=str(req.filename))
p = core.Paragraph(item)
tokens.String(p, content='Documentation: ')
filename = getattr(req, info['subcommand'])
autolink.AutoLink(p, page=str(filename))
def _addSections(self, container, page):
"""
Group content into <section> tags based on the heading tag.
Inputs:
root[tree.html.Tag]: The root tree.html node tree to add sections.read
collapsible[list]: A list with six entries indicating the sections to create as
collapsible.
"""
collapsible = self.getConfig(page, 'collapsible-sections')
if isinstance(collapsible, str):
collapsible = eval(collapsible)
section = container
for child in section.children:
if child.name in ('h1', 'h2', 'h3', 'h4', 'h5', 'h6'):
level = int(child.name[-1])
current = section.get("data-section-level",
0) # get the current section level
if level == current:
section = html.Tag(section.parent, 'section')
elif level > current:
section = html.Tag(section, 'section')
elif level < current:
section = html.Tag(section.parent.parent, 'section')
section['data-section-level'] = level
section['data-section-text'] = child.text()
section['id'] = uuid.uuid4()
if 'data-details-open' in child:
section['data-details-open'] = child['data-details-open']
child.parent = section
for node in moosetree.iterate(container,
lambda n: n.name == 'section'):
if 'data-details-open' in node:
status = node['data-details-open']
else:
status = collapsible[node['data-section-level'] - 1]
if status:
summary = html.Tag(None, 'summary')
node(0).parent = summary
details = html.Tag(None,
'details',
class_="moose-section-content")
if status.lower() == 'open':
details['open'] = 'open'
details.children = node.children
summary.parent = details
details.parent = node
icon = html.Tag(None, 'span', class_='moose-section-icon')
summary(0).children = [icon] + list(summary(0).children)
def text(self, sep=' '):
"""
Convert String objects into a single string.
"""
strings = []
for node in moosetree.iterate(self):
if node.name in ['Word', 'Number', 'String']:
strings.append(node['content'])
return sep.join(strings)
def postTokenize(self, page, ast):
"""
Adds a list of valid acronyms to the page attributes.
"""
func = lambda n: (n.name == 'AcronymToken')
for node in moosetree.iterate(ast.root, func):
acro = node.get('acronym')
if acro in self.__acronyms.keys() and acro not in page['acronyms'].keys():
page['acronyms'][acro] = self.__acronyms.get(acro)
def text(self):
"""
Convert String objects into a single string.
"""
strings = []
for node in moosetree.iterate(self):
if node.name == 'String':
strings.append(node['content'])
return re.sub(r' {2,}', ' ', ' '.join(strings))
def postTokenize(self, ast, page, meta, reader):
data = dict()
func = lambda n: (n.name == 'Heading')
for node in moosetree.iterate(ast.root, func):
id_ = node.get('id', '')
if id_ not in data:
data[id_] = node.copy()
meta.setData('heading', data)
def _check_syntax_node(node, app_name, generate, update, prefix, log_type):
"""
Check that required pages for syntax exists (e.g., Adaptivity/index.md).
"""
# Tuple for storing filename and existence
FileInfo = collections.namedtuple('FileInfo', 'name exists')
# Build a set if information tuples to consider
filenames = set()
func = lambda n: isinstance(n, syntax.ActionNode) and not n.removed
actions = moosetree.iterate(node, func)
for action in actions:
idx = action.source().find('/src/')
name = os.path.join(action.source()[:idx], prefix,
os.path.dirname(node.markdown()), 'index.md')
filenames.add(FileInfo(name=name, exists=os.path.isfile(name)))
# Case when no file exists
not_exist = all(not f.exists for f in filenames)
if not_exist and (not generate) and (not node.hidden):
msg = "No documentation for {}.\n".format(node.fullpath)
if len(filenames) == 1:
msg += " - The page should be located at {}.\n".format(
filenames.pop().name)
msg += " - It is possible to generate stub pages using " \
"'./moosedocs.py check --generate'."
else:
msg += " - The page should be located at one of the following locations:\n"
for info in filenames:
msg += " {}\n".format(info.name)
LOG.log(log_type, msg)
# Case when when no file exists but --generate was provided
elif not_exist and generate:
if len(filenames) == 1:
fname = filenames.pop().name
LOG.info("Creating stub page for %s at %s.", node.fullpath, fname)
if not os.path.exists(os.path.dirname(fname)):
os.makedirs(os.path.dirname(fname))
with open(fname, 'w') as fid:
content = _default_content(node)
fid.write(content)
else:
msg = "A stub page for {} cannot be created because the syntax definition location " \
"exists in multiple applications, the file can be located at any of the " \
"following locations.\n".format(node.fullpath)
for info in filenames:
msg += " {}\n".format(info.name)
LOG.log(log_type, msg)
else:
for info in filenames:
if info.exists:
_check_page_for_stub(node, app_name, info.name, update,
log_type)
def postTokenize(self, page, ast):
func = lambda n: (n.name == 'Heading')
for node in moosetree.iterate(ast.root, func):
id_ = node.get('id') or node.text('-').lower()
node['id'] = id_
if page['title'] is None:
page['title'] = node.copy()
if id_ not in page['headings']:
page['headings'][id_] = node.copy()
def _addRequirement(self, parent, info, page, req, requirements):
reqname = "{}:{}".format(req.path, req.name) if req.path != '.' else req.name
item = SQARequirementMatrixItem(parent, label=req.label, reqname=reqname,
satisfied=req.satisfied)
text = SQARequirementText(item)
self.reader.tokenize(text, req.text, page, MooseDocs.INLINE, info.line, report=False)
for token in moosetree.iterate(item):
if token.name == 'ErrorToken':
msg = common.report_error("Failed to tokenize SQA requirement.",
req.filename,
req.text_line,
req.text,
token['traceback'],
'SQA TOKENIZE ERROR')
LOG.critical(msg)
if req.details:
details = SQARequirementDetails(item)
for detail in req.details:
ditem = SQARequirementDetailItem(details)
text = SQARequirementText(ditem)
self.reader.tokenize(text, detail.text, page, MooseDocs.INLINE, info.line, \
report=False)
if self.settings['link']:
if self.settings['link-spec']:
p = SQARequirementSpecification(item, spec_path=req.path, spec_name=req.name)
hit_root = mooseutils.hit_load(req.filename)
h = hit_root.find(req.name)
content = h.render()
floats.create_modal_link(p,
title=reqname, string=reqname,
content=core.Code(None, language='text', content=content))
if self.settings['link-design'] and req.design:
p = SQARequirementDesign(item, filename=req.filename, design=req.design,
line=req.design_line)
if self.settings['link-issues'] and req.issues:
p = SQARequirementIssues(item, filename=req.filename, issues=req.issues,
line=req.issues_line)
if self.settings.get('link-prerequisites', False) and req.prerequisites:
labels = []
for prereq in req.prerequisites:
for other in requirements:
if (other.name == prereq) and (other.path == req.path):
labels.append((other.path, other.name, other.label))
for detail in other.details:
if (detail.name == prereq) and (detail.path == req.path):
labels.append((other.path, other.name, other.label))
SQARequirementPrequisites(item, specs=labels)
def _processPages(self, root):
"""
Build a main latex file that includes the others.
"""
main = base.NodeBase(None, None)
latex.Command(main, 'documentclass', string='report', end='')
for package, options in self.translator.renderer.getPackages().items():
args = []
if options[0] or options[1]:
args = [self._getOptions(*options)]
latex.Command(main,
'usepackage',
args=args,
string=package,
start='\n',
end='')
latex.String(main,
content='\\setlength{\\parindent}{0pt}',
start='\n',
escape=False)
for preamble in self.translator.renderer.getPreamble():
latex.String(main, content='\n' + preamble, escape=False)
# New Commands
for cmd in self.translator.renderer.getNewCommands().values():
cmd.parent = main
doc = latex.Environment(main, 'document', end='\n')
for node in moosetree.iterate(root, lambda n: 'page' in n):
page = node['page']
if self.translator.getMetaData(page, 'active'):
cmd = latex.Command(doc, 'input', start='\n')
latex.String(cmd, content=str(page.destination), escape=False)
# BibTeX
bib_files = [
n.source for n in self.translator.content
if n.source.endswith('.bib')
]
if bib_files:
latex.Command(doc,
'bibliographystyle',
start='\n',
string='unsrtnat')
latex.Command(doc,
'bibliography',
string=','.join(bib_files),
start='\n',
escape=False)
return main
def check(translator,
dump=False,
update=False,
generate=False,
object_prefix=os.path.join('doc', 'content', 'source'),
syntax_prefix=os.path.join('doc', 'content', 'syntax')):
"""Helper to all both main and build.py:main to perform check."""
# Extract the syntax root node
app_syntax = None
extension = None
for ext in translator.extensions:
if ext.name == 'appsyntax':
extension = ext
extension.preExecute(translator.content)
app_syntax = ext.syntax
break
if (extension is None) or (not extension.active):
LOG.info("Syntax is disabled, skipping the check.")
return 0
if app_syntax is None:
msg = "Failed to locate AppSyntaxExtension for the given configuration."
raise exceptions.MooseDocsException(msg)
# Dump the complete syntax for the application
if dump:
print(app_syntax)
# The default build for any application creates the test app (e.g., FrogTestApp), therefore
# the actual application name must be captured from this name to properly generate stub pages.
# This is because the --generate option will only create stub pages for objects registered
# within the running application, otherwise pages for all MOOSE and modules objects would
# be generated if they were not included. However, for a given object the registered application
# from the register macros is used, thus the compiled application used for building
# documentation (FrogTestApp) and the object registration name (FrogApp) are always out of sync.
# The simple fix is to change the name of the running application here.
app_name = extension.apptype.replace('TestApp', 'App')
# Perform check for all the nodes
for node in moosetree.iterate(app_syntax):
if node.is_root or node.removed:
continue
elif isinstance(node, syntax.ObjectNode):
_check_object_node(node, app_name, generate, update, object_prefix)
elif isinstance(node, syntax.SyntaxNode):
_check_syntax_node(node, app_name, generate, update, syntax_prefix)
else:
LOG.critical(
"Unexpected object type of %s, only %s and %s based types are supported",
type(node).__name__, syntax.ObjectNode.__name__,
syntax.SyntaxNode.__name__)
return 0
def postTokenize(self, page, ast):
if page['citations']:
has_bib = False
for node in moosetree.iterate(ast):
if node.name == 'BibtexBibliography':
has_bib = True
break
if not has_bib:
core.Heading(ast, level=2, string='References')
BibtexBibliography(ast, bib_style='plain')
def preExecute(self):
"""Populate a list of registered applications."""
syntax = None
for ext in self.translator.extensions:
if isinstance(ext, appsyntax.AppSyntaxExtension):
syntax = ext.syntax
break
if syntax is not None:
for node in moosetree.iterate(syntax):
self._registerd_apps.update(node.groups())
def getShortcut(self, token):
key = token['key']
if key in self.__cache:
return self.__cache[key]
#TODO: error if more than one found
for node in moosetree.iterate(token.root):
if node.name == 'Shortcut' and node['key'] == key:
self.__cache[key] = node
return node
msg = "The shortcut link key '{}' was not located in the list of shortcuts."
raise exceptions.MooseDocsException(msg, key)
def postTokenize(self, ast, page, meta, reader):
if self.__citations:
meta.getData('citations').extend(self.__citations)
del self.__citations[:] # TODO: In python 3 this should be a clear()
has_bib = False
for node in moosetree.iterate(ast):
if node.name == 'BibtexBibliography':
has_bib = True
break
if not has_bib:
BibtexBibliography(ast)
def postTokenize(self, page, ast):
if self.__citations:
page['citations'].extend(self.__citations)
self.__citations.clear()
has_bib = False
for node in moosetree.iterate(ast):
if node.name == 'BibtexBibliography':
has_bib = True
break
if not has_bib:
BibtexBibliography(ast)
def __initApplicationSyntax(self):
"""Initialize the application syntax."""
start = time.time()
LOG.info("Reading MOOSE application syntax...")
exe = mooseutils.eval_path(self['executable'])
exe = mooseutils.find_moose_executable(exe,
name=self['app_name'],
show_error=False)
self._app_exe = exe
if exe is None:
LOG.error("Failed to locate a valid executable in %s.",
self['executable'])
else:
try:
self._app_syntax = moosesyntax.get_moose_syntax_tree(
exe,
remove=self['remove'],
alias=self['alias'],
unregister=self['unregister'])
out = mooseutils.runExe(exe, ['--type'])
match = re.search(r'^MooseApp Type:\s+(?P<type>.*?)$',
out,
flags=re.MULTILINE)
if match:
self._app_type = match.group("type")
else:
msg = "Failed to determine application type by running the following:\n"
msg += " {} --type".format(exe)
LOG.error(msg)
except Exception as e:
msg = "Failed to load application executable from '{}' with the following error; " \
"application syntax is being disabled.\n".format(exe)
msg += '\n{}\n'.format(
mooseutils.colorText(traceback.format_exc(), 'GREY'))
msg += "This typically indicates that the application is not producing JSON output " \
"correctly, try running the following:\n" \
" {} --json --allow-test-objects\n".format(exe)
self.setActive(False)
LOG.error(msg)
# Enable test objects by removing the test flag (i.e., don't consider them test objects)
if self['allow-test-objects'] and (self._app_syntax is not None):
for node in moosetree.iterate(self._app_syntax):
node.test = False
LOG.info("MOOSE application syntax complete [%s sec.]",
time.time() - start)
def _getNodeIDs(root):
"""Return all 'ids' in a node tree."""
keys = []
id_ = root.get('id', None)
if id_:
keys.append(id_)
for node in moosetree.iterate(root,
method=moosetree.IterMethod.PRE_ORDER):
id_ = node.get('id', None)
if id_:
keys.append(id_)
return keys
def _reportLatexWarnings(self, lnode, content):
"""Helper to display latex warnings."""
# Locate the Page object where the error was producec.
pnode = None
for page in content:
if lnode['filename'] in page.destination:
pnode = page
break
# Get the rendered result tree and locate the start/end lines for each node
result = None
if pnode is not None:
pass
# TODO: The ability to get the ResultTree has been removed, this was the only function
# calling it and the potential slow downs and abuse out pace the use case here
#result = self.translator.getResultTree(pnode)
#result['_start_line'] = 1
#self._lineCounter(result)
# Report warning(s)
for w in lnode['warnings']:
# Locate the rendered node that that caused the error
r_node = None
if result:
for r in moosetree.iterate(result):
if w.line >= r.get('_start_line', float('Inf')):
r_node = r
# Build message
msg = '\n'
msg += mooseutils.colorText('pdfLaTeX Warning: {}\n'.format(w.content),
'LIGHT_YELLOW')
if r_node:
msg += box(r_node.write(),
title='IN: {}:{}'.format(pnode.destination, w.line),
width=100,
color='GREY')
msg += '\n'
info = r_node.get('info', None)
if info is not None:
msg += box(info[0],
title='FROM: {}:{}'.format(pnode.source, info.line),
color='GREY')
LOG.warning(msg)
def postTokenize(self, page, ast):
items = set()
fields = set()
for node in moosetree.iterate(ast):
if node.name == 'TemplateItem':
items.add(node['key'])
elif node.name == 'TemplateField':
fields.add(node['key'])
unknown_items = items.difference(fields)
if unknown_items:
msg = "Unknown template item(s): {}\n{}"
raise exceptions.MooseDocsException(msg, ', '.join(unknown_items),
page.source)
def checkDuplicates(root):
"""Check for duplicate blocks and/or parameters"""
paths = set()
for node in moosetree.iterate(root, method=moosetree.IterMethod.PRE_ORDER):
if node.fullpath in paths:
yield ('duplicate section "{}"'.format(node.fullpath), node)
else:
paths.add(node.fullpath)
for key, _ in node.params():
fullparam = os.path.join(node.fullpath, key)
if fullparam in paths:
yield ('duplicate parameter "{}"'.format(fullparam), node, key)
else:
paths.add(fullparam)
def removeInputBlocks(hit, remove):
"""Remove input file block(s) and/or parameter(s)"""
for r in remove.split():
for node in moosetree.iterate(hit):
block, param = InputListingCommand.removeHelper(node, r)
if block is not None:
if param is None:
node.remove()
else:
node.removeParam(param)
break
if block is None:
msg = 'Unable to locate block or parameter with name: {}'
raise exceptions.MooseDocsException(msg, r)
return str(hit.render())
def __initApplicationSyntax(self):
"""Initialize the application syntax."""
start = time.time()
LOG.info("Reading MOOSE application syntax...")
exe = mooseutils.eval_path(self['executable'])
exe = mooseutils.find_moose_executable(exe,
name=self['app_name'],
show_error=False)
self._app_exe = exe
if exe is None:
LOG.error("Failed to locate a valid executable in %s.",
self['executable'])
else:
try:
self._app_syntax = moosesyntax.get_moose_syntax_tree(
exe,
remove=self['remove'],
alias=self['alias'],
unregister=self['unregister'])
out = mooseutils.runExe(exe, ['--type'])
match = re.search(r'^MooseApp Type:\s+(?P<type>.*?)$',
out,
flags=re.MULTILINE)
if match:
self._app_type = match.group("type")
else:
msg = "Failed to determine application type by running the following:\n"
msg += " {} --type".format(exe)
LOG.error(msg)
except Exception as e:
msg = "Failed to load application executable from '%s', " \
"application syntax is being disabled:\n%s"
self.setActive(False)
LOG.error(msg, exe, e)
# Enable test objects by removing the test flag (i.e., don't consider them test objects)
if self['allow-test-objects']:
for node in moosetree.iterate(self._app_syntax):
node.test = False
LOG.info("MOOSE application syntax complete [%s sec.]",
time.time() - start)
def postTokenize(self, ast, page, meta, reader):
labels = set()
count = 0
func = lambda n: (n.name == 'LatexBlockEquation') and (n['label'] is
not None)
for node in moosetree.iterate(ast, func):
count += 1
node['number'] = count
if node['label']:
if isinstance(self.translator.renderer,
renderers.LatexRenderer):
labels.add(node['label'])
else:
core.Shortcut(ast,
key=node['label'],
string='{} ({})'.format(
self.get('prefix'), count),
link='#{}'.format(node['bookmark']))
meta.setData('labels', labels)