def get_region(self, name):
""" Returns a Region object relevant to this tree, given a filename"""
assert self.ensure_consistency()
return SeqUtils.filter_expect_single(self.get_regions(),
lambda r: r.name == name)
def get_channel(self, name):
try:
return SeqUtils.filter_expect_single(
self.get_all_mechanisms_applied_to_cell(),
lambda chl: chl.name == name)
except:
print 'Options: ', [
chl.name for chl in self.get_all_mechanisms_applied_to_cell()
]
raise
def check_region(self, region, morph):
check_cstyle_varname(region.name)
# Check no-other region has this name:
# print "Checking region:", region.name
# print "All Regions:", ",".join([r.name for r in self.morph.get_regions()])
assert SeqUtils.filter_expect_single(self.morph.get_regions(),
lambda rgn: rgn.name == region.name) == region
assert region.morph == morph
for section in region.sections:
assert region == section.region
def __call__(self, morph=None):
self.morph = SeqUtils.filter_expect_single(
[morph, self.morph], lambda s: s is not None)
if not self.alreadycalled:
self.pretraversefunctor()
self.visit_section_internal(self.morph.get_dummy_section())
self.posttraversefunctor()
self.alreadycalled = True
return self.returnfunctor()
def check_region(self, region, morph):
check_cstyle_varname(region.name)
# Check no-other region has this name:
# print "Checking region:", region.name
# print "All Regions:", ",".join([r.name for r in self.morph.get_regions()])
assert SeqUtils.filter_expect_single(
self.morph.get_regions(),
lambda rgn: rgn.name == region.name) == region
assert region.morph == morph
for section in region.sections:
assert region == section.region
def get_channel(self, name):
try:
return SeqUtils.filter_expect_single(self.get_all_mechanisms_applied_to_cell(), lambda chl: chl.name==name)
except:
print 'Options: ', [ chl.name for chl in self.get_all_mechanisms_applied_to_cell() ]
raise
def get_section(self, idtag):
""" Returns a Section object with a given id"""
#assert self.ensure_consistency()
return SeqUtils.filter_expect_single(self, lambda s: s.idtag == idtag)
def get_region(self, name):
""" Returns a Region object relevant to this tree, given a filename"""
assert self.ensure_consistency()
return SeqUtils.filter_expect_single(self.get_regions(), lambda r: r.name == name)
def get_section(self, idtag):
""" Returns a Section object with a given id"""
#assert self.ensure_consistency()
return SeqUtils.filter_expect_single(self, lambda s: s.idtag == idtag)
