def process_many_mutation(ifiles, ofiles):
"""Process Sentence files in Batch format.
This function is useful for when you need to procecess lots of files in
one large batch.
"""
finder = mutfinder_gen('regex.txt')
for ifile, ofile in zip(ifiles, ofiles):
print ifile
with open(ifile) as handle:
reader = csv.DictReader(handle, delimiter = '\t', fieldnames = ('ParNum', 'Text'))
rows = [x for x in reader]
ofields = ('ParNum', 'SentNum', 'Mutation', 'Text')
with open(ofile, 'w') as handle:
writer = csv.DictWriter(handle, ofields, delimiter = '\t')
writer.writerow(dict(zip(ofields, ofields)))
for row in rows:
if row['Text']:
sent_list = ['']+list(sent_tokenize(row['Text'].replace('\n', '')))+['']
for sentnum, sent in enumerate(sent_list):
for mut, _ in finder(sent).items():
text = ' '.join(sent_list[sentnum-1:sentnum+1])
nrow = {'Text': text,
'ParNum': row['ParNum'],
'SentNum': sentnum,
'Mutation': mut}
writer.writerow(nrow)
def process_many_mutation(ifiles, ofiles):
"""Process Sentence files in Batch format.
This function is useful for when you need to procecess lots of files in
one large batch.
"""
finder = mutfinder_gen('regex.txt')
for ifile, ofile in zip(ifiles, ofiles):
print ifile
with open(ifile) as handle:
reader = csv.DictReader(handle,
delimiter='\t',
fieldnames=('ParNum', 'Text'))
rows = [x for x in reader]
ofields = ('ParNum', 'SentNum', 'Mutation', 'Text')
with open(ofile, 'w') as handle:
writer = csv.DictWriter(handle, ofields, delimiter='\t')
writer.writerow(dict(zip(ofields, ofields)))
for row in rows:
if row['Text']:
sent_list = [''] + list(
sent_tokenize(row['Text'].replace('\n', ''))) + ['']
for sentnum, sent in enumerate(sent_list):
for mut, _ in finder(sent).items():
text = ' '.join(sent_list[sentnum - 1:sentnum + 1])
nrow = {
'Text': text,
'ParNum': row['ParNum'],
'SentNum': sentnum,
'Mutation': mut
}
writer.writerow(nrow)
def process_mutation(ifile, ofile, finder = None):
with open(ifile) as handle:
reader = csv.DictReader(handle, delimiter = '\t', fieldnames = ('ParNum', 'Text'))
rows = [x for x in reader]
if finder is None:
finder = mutfinder_gen('regex.txt')
ofields = ('ParNum', 'SentNum', 'Mutation', 'Text')
with open(ofile, 'w') as handle:
writer = csv.DictWriter(handle, ofields, delimiter = '\t')
writer.writerow(dict(zip(ofields, ofields)))
for row in rows:
if row['Text']:
sent_list = ['']+list(sent_tokenize(row['Text'].replace('\n', '')))+['']
for sentnum, sent in enumerate(sent_list):
for mut, _ in finder(sent).items():
text = ' '.join(sent_list[sentnum-1:sentnum+1])
nrow = {'Text': text,
'ParNum': row['ParNum'],
'SentNum': sentnum,
'Mutation': mut}
writer.writerow(nrow)
def process_mutation(ifile, ofile, finder=None):
with open(ifile) as handle:
reader = csv.DictReader(handle,
delimiter='\t',
fieldnames=('ParNum', 'Text'))
rows = [x for x in reader]
if finder is None:
finder = mutfinder_gen('regex.txt')
ofields = ('ParNum', 'SentNum', 'Mutation', 'Text')
with open(ofile, 'w') as handle:
writer = csv.DictWriter(handle, ofields, delimiter='\t')
writer.writerow(dict(zip(ofields, ofields)))
for row in rows:
if row['Text']:
sent_list = [''] + list(
sent_tokenize(row['Text'].replace('\n', ''))) + ['']
for sentnum, sent in enumerate(sent_list):
for mut, _ in finder(sent).items():
text = ' '.join(sent_list[sentnum - 1:sentnum + 1])
nrow = {
'Text': text,
'ParNum': row['ParNum'],
'SentNum': sentnum,
'Mutation': mut
}
writer.writerow(nrow)