def test_remove_if_redundant_with_multiple_edges_same_citations(self):
net = NiceCXNetwork()
adjud = RedundantEdgeAdjudicator()
nid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='neighbor-of')
net.set_edge_attribute(nid,
RedundantEdgeAdjudicator.CITATION,
['pubmed:4', 'pubmed:123'],
type='list_of_string')
cid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
net.set_edge_attribute(cid,
RedundantEdgeAdjudicator.CITATION,
['pubmed:555', 'pubmed:4'],
type='list_of_string')
cidtwo = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
net.set_edge_attribute(cidtwo,
RedundantEdgeAdjudicator.CITATION,
['pubmed:4', 'pubmed:123'],
type='list_of_string')
self.assertEqual('neighbor-of', net.get_edge(nid)['i'])
adjud._remove_if_redundant(net, nid, [cid, cidtwo])
self.assertEqual(None, net.get_edge(nid))
def test_remove_if_redundant_with_no_citation_on_edge(self):
net = NiceCXNetwork()
adjud = RedundantEdgeAdjudicator()
nid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='neighbor-of')
cid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
self.assertEqual('neighbor-of', net.get_edge(nid)['i'])
adjud._remove_if_redundant(net, nid, [cid])
self.assertEqual(None, net.get_edge(nid))
def test_remove_if_redundant_with_citation_and_other_lacks_citation(self):
net = NiceCXNetwork()
adjud = RedundantEdgeAdjudicator()
nid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='neighbor-of')
net.set_edge_attribute(nid,
RedundantEdgeAdjudicator.CITATION,
['pubmed:123'],
type='list_of_string')
cid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
self.assertEqual('neighbor-of', net.get_edge(nid)['i'])
adjud._remove_if_redundant(net, nid, [cid])
self.assertEqual('neighbor-of', net.get_edge(nid)['i'])
def test_remove_if_redundant_mergecitations_true(self):
net = NiceCXNetwork()
adjud = RedundantEdgeAdjudicator()
nid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='neighbor-of')
net.set_edge_attribute(nid,
RedundantEdgeAdjudicator.CITATION,
['pubmed:4', 'pubmed:123'],
type='list_of_string')
cid = net.create_edge(edge_source=0,
edge_target=1,
edge_interaction='controls-state-change-of')
self.assertEqual('neighbor-of', net.get_edge(nid)['i'])
adjud._remove_if_redundant(net, nid, [cid], mergecitations=True)
self.assertEqual(None, net.get_edge(nid))
res = net.get_edge_attribute(cid, RedundantEdgeAdjudicator.CITATION)
res['v'].sort()
self.assertEqual(['pubmed:123', 'pubmed:4'], res['v'])