def test_trajectory_too_short(self):
landscape = Landscape(ECA(30), size=3)
with self.assertRaises(ValueError):
landscape.trajectory([0, 0, 0], timesteps=-1)
with self.assertRaises(ValueError):
landscape.trajectory([0, 0, 0], timesteps=0)
def test_timeseries_wtnetworks(self):
for net, size in [(s_pombe, 9), (s_cerevisiae, 11), (c_elegans, 8)]:
landscape = Landscape(net)
time = 10
series = landscape.timeseries(time)
self.assertEqual((size, 2**size, time + 1), series.shape)
for index, state in enumerate(net.state_space()):
traj = landscape.trajectory(state, timesteps=time)
for t, expect in enumerate(traj):
got = series[:, index, t]
self.assertTrue(np.array_equal(expect, got))
def test_timeseries_eca(self):
rule = ECA(30)
for size in [5, 7, 11]:
landscape = Landscape(rule, size=size)
time = 10
series = landscape.timeseries(time)
self.assertEqual((size, 2**size, time + 1), series.shape)
for index, state in enumerate(rule.state_space(size)):
traj = landscape.trajectory(state, timesteps=time)
for t, expect in enumerate(traj):
got = series[:, index, t]
self.assertTrue(np.array_equal(expect, got))
def test_trajectory_logicnetwork(self):
net = LogicNetwork([((1, 2), {'01', '10'}),
((0, 2), {'01', '10', '11'}), ((0, 1), {'11'})])
landscape = Landscape(net)
state = [0, 1, 0]
got = landscape.trajectory(state, encode=False)
self.assertEqual([0, 1, 0], state)
self.assertEqual([[0, 1, 0], [1, 0, 0]], got)
got = landscape.trajectory(state, timesteps=3, encode=False)
self.assertEqual([0, 1, 0], state)
self.assertEqual([[0, 1, 0], [1, 0, 0], [0, 1, 0], [1, 0, 0]], got)
got = landscape.trajectory(state)
self.assertEqual([0, 1, 0], state)
self.assertEqual([[0, 1, 0], [1, 0, 0]], got)
got = landscape.trajectory(state, timesteps=3)
self.assertEqual([0, 1, 0], state)
self.assertEqual([[0, 1, 0], [1, 0, 0], [0, 1, 0], [1, 0, 0]], got)
got = landscape.trajectory(state, encode=True)
self.assertEqual([0, 1, 0], state)
self.assertEqual([2, 1], got)
got = landscape.trajectory(state, timesteps=3, encode=True)
self.assertEqual([0, 1, 0], state)
self.assertEqual([2, 1, 2, 1], got)
state = 2
got = landscape.trajectory(state)
self.assertEqual([2, 1], got)
got = landscape.trajectory(state, timesteps=3)
self.assertEqual([2, 1, 2, 1], got)
got = landscape.trajectory(state, encode=True)
self.assertEqual([2, 1], got)
got = landscape.trajectory(state, timesteps=3, encode=True)
self.assertEqual([2, 1, 2, 1], got)
got = landscape.trajectory(state, encode=False)
self.assertEqual([[0, 1, 0], [1, 0, 0]], got)
got = landscape.trajectory(state, timesteps=3, encode=False)
self.assertEqual([[0, 1, 0], [1, 0, 0], [0, 1, 0], [1, 0, 0]], got)
def test_trajectory_wtnetwork(self):
net = WTNetwork(weights=[[1, 0], [-1, 0]],
thresholds=[0.5, 0.0],
theta=WTNetwork.positive_threshold)
landscape = Landscape(net)
state = [0, 0]
got = landscape.trajectory(state)
self.assertEqual([0, 0], state)
self.assertEqual([[0, 0], [0, 1]], got)
got = landscape.trajectory(state, timesteps=3)
self.assertEqual([0, 0], state)
self.assertEqual([[0, 0], [0, 1], [0, 1], [0, 1]], got)
got = landscape.trajectory(state, encode=False)
self.assertEqual([0, 0], state)
self.assertEqual([[0, 0], [0, 1]], got)
got = landscape.trajectory(state, timesteps=3, encode=False)
self.assertEqual([0, 0], state)
self.assertEqual([[0, 0], [0, 1], [0, 1], [0, 1]], got)
got = landscape.trajectory(state, encode=True)
self.assertEqual([0, 0], state)
self.assertEqual([0, 2], got)
got = landscape.trajectory(state, timesteps=3, encode=True)
self.assertEqual([0, 0], state)
self.assertEqual([0, 2, 2, 2], got)
state = 0
got = landscape.trajectory(state)
self.assertEqual([0, 2], got)
got = landscape.trajectory(state, timesteps=3)
self.assertEqual([0, 2, 2, 2], got)
got = landscape.trajectory(state, encode=True)
self.assertEqual([0, 2], got)
got = landscape.trajectory(state, timesteps=3, encode=True)
self.assertEqual([0, 2, 2, 2], got)
got = landscape.trajectory(state, encode=False)
self.assertEqual([[0, 0], [0, 1]], got)
got = landscape.trajectory(state, timesteps=3, encode=False)
self.assertEqual([[0, 0], [0, 1], [0, 1], [0, 1]], got)
def test_trajectory_eca(self):
landscape = Landscape(ECA(30), size=3)
with self.assertRaises(ValueError):
landscape.trajectory([])
with self.assertRaises(ValueError):
landscape.trajectory([0, 1])
xs = [0, 1, 0]
got = landscape.trajectory(xs)
self.assertEqual([0, 1, 0], xs)
self.assertEqual([[0, 1, 0], [1, 1, 1], [0, 0, 0]], got)
got = landscape.trajectory(xs, timesteps=5)
self.assertEqual([0, 1, 0], xs)
self.assertEqual(
[[0, 1, 0], [1, 1, 1], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0]],
got)
got = landscape.trajectory(xs, encode=False)
self.assertEqual([0, 1, 0], xs)
self.assertEqual([[0, 1, 0], [1, 1, 1], [0, 0, 0]], got)
got = landscape.trajectory(xs, timesteps=5, encode=False)
self.assertEqual([0, 1, 0], xs)
self.assertEqual(
[[0, 1, 0], [1, 1, 1], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0]],
got)
got = landscape.trajectory(xs, encode=True)
self.assertEqual([0, 1, 0], xs)
self.assertEqual([2, 7, 0], list(got))
got = landscape.trajectory(xs, timesteps=5, encode=True)
self.assertEqual([0, 1, 0], xs)
self.assertEqual([2, 7, 0, 0, 0, 0], list(got))
xs = 2
got = landscape.trajectory(xs)
self.assertEqual([2, 7, 0], list(got))
got = landscape.trajectory(xs, timesteps=5)
self.assertEqual([2, 7, 0, 0, 0, 0], list(got))
got = landscape.trajectory(xs, encode=True)
self.assertEqual([2, 7, 0], list(got))
got = landscape.trajectory(xs, timesteps=5, encode=True)
self.assertEqual([2, 7, 0, 0, 0, 0], list(got))
got = landscape.trajectory(xs, encode=False)
self.assertEqual([[0, 1, 0], [1, 1, 1], [0, 0, 0]], got)
got = landscape.trajectory(xs, timesteps=5, encode=False)
self.assertEqual(
[[0, 1, 0], [1, 1, 1], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0]],
got)
