def test_all(self):
objects = [Block, Segment, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal,
SpikeTrain, Event, Epoch]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 4)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 6)
self.assertEqual(len(seg1.events), 3)
self.assertEqual(len(seg1.epochs), 2)
self.assertEqual(len(seg2.analogsignals), 4)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 6)
self.assertEqual(len(seg2.events), 3)
self.assertEqual(len(seg2.epochs), 2)
self.assertEqual(len(seg3.analogsignals), 4)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 6)
self.assertEqual(len(seg3.events), 3)
self.assertEqual(len(seg3.epochs), 2)
def test_block_segment(self):
objects = [Segment, Block]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 0)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 0)
self.assertEqual(len(seg1.events), 0)
self.assertEqual(len(seg1.epochs), 0)
self.assertEqual(len(seg2.analogsignals), 0)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 0)
self.assertEqual(len(seg2.events), 0)
self.assertEqual(len(seg2.epochs), 0)
self.assertEqual(len(seg3.analogsignals), 0)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 0)
self.assertEqual(len(seg3.events), 0)
self.assertEqual(len(seg3.epochs), 0)
def test_all(self):
objects = [
Block, Segment, ChannelIndex, Unit, AnalogSignal,
IrregularlySampledSignal, SpikeTrain, Event, Epoch
]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 4)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 6)
self.assertEqual(len(seg1.events), 3)
self.assertEqual(len(seg1.epochs), 2)
self.assertEqual(len(seg2.analogsignals), 4)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 6)
self.assertEqual(len(seg2.events), 3)
self.assertEqual(len(seg2.epochs), 2)
self.assertEqual(len(seg3.analogsignals), 4)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 6)
self.assertEqual(len(seg3.events), 3)
self.assertEqual(len(seg3.epochs), 2)
def test_block_segment(self):
objects = [Segment, Block]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 3)
seg1, seg2, seg3 = res.segments
self.assertEqual(len(seg1.analogsignals), 0)
self.assertEqual(len(seg1.irregularlysampledsignals), 0)
self.assertEqual(len(seg1.spiketrains), 0)
self.assertEqual(len(seg1.events), 0)
self.assertEqual(len(seg1.epochs), 0)
self.assertEqual(len(seg2.analogsignals), 0)
self.assertEqual(len(seg2.irregularlysampledsignals), 0)
self.assertEqual(len(seg2.spiketrains), 0)
self.assertEqual(len(seg2.events), 0)
self.assertEqual(len(seg2.epochs), 0)
self.assertEqual(len(seg3.analogsignals), 0)
self.assertEqual(len(seg3.irregularlysampledsignals), 0)
self.assertEqual(len(seg3.spiketrains), 0)
self.assertEqual(len(seg3.events), 0)
self.assertEqual(len(seg3.epochs), 0)
def test_block(self):
objects = [Block]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def test_block(self):
objects = [Block]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def generate_files_for_io_able_to_write(self):
'''
Write files for use in testing.
'''
self.files_generated = []
if not self.able_to_write_or_read():
return
generate_from_supported_objects(self.ioclass.supported_objects)
ioobj, path = self.generic_io_object(return_path=True, clean=True)
if ioobj is None:
return
self.files_generated.append(path)
write_generic(ioobj, target=self.higher)
close_object_safe(ioobj)
def test_all_without_segment(self):
objects = [Block, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_from_supported_objects(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def generate_files_for_io_able_to_write(self):
'''
Write files for use in testing.
'''
self.files_generated = []
if not self.able_to_write_or_read():
return
generate_from_supported_objects(self.ioclass.supported_objects)
ioobj, path = self.generic_io_object(return_path=True, clean=True)
if ioobj is None:
return
self.files_generated.append(path)
write_generic(ioobj, target=self.higher)
close_object_safe(ioobj)
def test_all_without_segment(self):
objects = [Block, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_from_supported_objects(supported_objects=objects)
self.assertTrue(isinstance(res, Block))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.segments), 0)
def test_segment(self):
objects = [Segment]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Segment))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.analogsignals), 0)
self.assertEqual(len(res.irregularlysampledsignals), 0)
self.assertEqual(len(res.spiketrains), 0)
self.assertEqual(len(res.events), 0)
self.assertEqual(len(res.epochs), 0)
def test_segment(self):
objects = [Segment]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Segment))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.analogsignals), 0)
self.assertEqual(len(res.irregularlysampledsignals), 0)
self.assertEqual(len(res.spiketrains), 0)
self.assertEqual(len(res.events), 0)
self.assertEqual(len(res.epochs), 0)
def test_all_without_block(self):
objects = [Segment, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Segment))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.analogsignals), 4)
self.assertEqual(len(res.irregularlysampledsignals), 0)
self.assertEqual(len(res.spiketrains), 6)
self.assertEqual(len(res.events), 3)
self.assertEqual(len(res.epochs), 2)
def test_all_without_block(self):
objects = [Segment, ChannelIndex, Unit, AnalogSignal, IrregularlySampledSignal, SpikeTrain,
Event, Epoch]
res = generate_from_supported_objects(objects)
self.assertTrue(isinstance(res, Segment))
assert_neo_object_is_compliant(res)
self.assertEqual(len(res.analogsignals), 4)
self.assertEqual(len(res.irregularlysampledsignals), 0)
self.assertEqual(len(res.spiketrains), 6)
self.assertEqual(len(res.events), 3)
self.assertEqual(len(res.epochs), 2)
def write_generic(ioobj, target=None, obj=None, return_writer=False):
"""
Write the target object to a file using the given neo io object ioobj.
If target is None, use the first supported_objects from ioobj
If target is False, use the 'write' method.
If target is the Block or Segment class, use write_block or write_segment,
respectively.
If target is a string, use 'write_'+target.
obj is the object to write. If obj is None, an object is created
automatically for the io class.
If return_writer is True, yield the io writer function as well as the
object. yield obj, writer. Default is False.
"""
if obj is None:
supported_objects = ioobj.supported_objects
obj = generate_from_supported_objects(supported_objects)
obj_writer = create_generic_writer(ioobj, target=target)
obj_writer(obj)
if return_writer:
return obj, obj_writer
return obj
def write_generic(ioobj, target=None, obj=None, return_writer=False):
"""
Write the target object to a file using the given neo io object ioobj.
If target is None, use the first supported_objects from ioobj
If target is False, use the 'write' method.
If target is the Block or Segment class, use write_block or write_segment,
respectively.
If target is a string, use 'write_'+target.
obj is the object to write. If obj is None, an object is created
automatically for the io class.
If return_writer is True, yield the io writer function as well as the
object. yield obj, writer. Default is False.
"""
if obj is None:
supported_objects = ioobj.supported_objects
obj = generate_from_supported_objects(supported_objects)
obj_writer = create_generic_writer(ioobj, target=target)
obj_writer(obj)
if return_writer:
return obj, obj_writer
return obj
