def test_get_remote_bifurcation_angles(self):
ref_remote_bifangles = []
for t in self.neuron.neurites:
ref_remote_bifangles.extend(a for a in i_remote_bifurcation_angle(t))
remote_bifangles = self.neuron.get_remote_bifurcation_angles()
nt.assert_equal(len(remote_bifangles), 40)
nt.assert_true(np.all(remote_bifangles == ref_remote_bifangles))
remote_bifangles = self.neuron.get_remote_bifurcation_angles(TreeType.all)
nt.assert_equal(len(remote_bifangles), 40)
nt.assert_true(np.all(remote_bifangles == ref_remote_bifangles))
def test_get_remote_bifurcation_angles(self):
ref_remote_bifangles = []
for t in self.neuron.neurites:
ref_remote_bifangles.extend(a
for a in i_remote_bifurcation_angle(t))
remote_bifangles = self.neuron.get_remote_bifurcation_angles()
nt.assert_equal(len(remote_bifangles), 40)
nt.assert_true(np.all(remote_bifangles == ref_remote_bifangles))
remote_bifangles = self.neuron.get_remote_bifurcation_angles(
TreeType.all)
nt.assert_equal(len(remote_bifangles), 40)
nt.assert_true(np.all(remote_bifangles == ref_remote_bifangles))
def test_i_remote_bifurcation_angles():
T = BRANCHING_TREE
# (fork point, end point, end point) tuples calculated by hand
# from BRANCHING_TREE
refs = (((0, 4, 0), (0, 5, 0), (15, 15, 0)),
((0, 5, 0), (4, 5, 0), (0, 5, 3)),
((0, 5, 3), (0, 6, 3), (0, 6, 4)))
ref_angles = tuple(angle_3points(p[0], p[1], p[2]) / math.pi for p in refs)
ref = (0.2985898, 0.5, 0.25) # ref angles in pi radians
# sanity check
for i, b in enumerate(ref_angles):
nt.assert_almost_equal(b, ref[i])
for i, b in enumerate(i_remote_bifurcation_angle(T)):
nt.assert_almost_equal(b / math.pi, ref_angles[i])
nt.assert_almost_equal(b / math.pi, ref[i])