def test_parse_format_line(self): d = DataHandler() f = d.parse_format_line('Format datatype=standard symbols="01" gap=-;') assert f['datatype'] == 'standard', "Expected 'standard', but got '%s'" % f['datatype'] assert f['symbols'] == '01', "Expected '01', but got '%s'" % f['symbols'] assert f['gap'] == '-', "Expected 'gap', but got '%s'" % f['gap'] f = d.parse_format_line('FORMAT datatype=RNA missing=? gap=- symbols="ACGU" labels interleave;') assert f['datatype'] == 'rna', "Expected 'rna', but got '%s'" % f['datatype'] assert f['missing'] == '?', "Expected '?', but got '%s'" % f['missing'] assert f['gap'] == '-', "Expected '-', but got '%s'" % f['gap'] assert f['symbols'] == 'acgu', "Expected 'acgu', but got '%s'" % f['symbols'] assert f['labels'] == True, "Expected <True>, but got '%s'" % f['labels'] assert f['interleave'] == True, "Expected <True>, but got '%s'" % f['interleave']
def test_parse_format_line_returns_none(self): d = DataHandler() assert d.parse_format_line('#NEXUS ') is None assert d.parse_format_line('') is None assert d.parse_format_line('Begin data;') is None assert d.parse_format_line('Dimensions ntax=4 nchar=2;') is None assert d.parse_format_line('Matrix') is None assert d.parse_format_line('Harry 00') is None assert d.parse_format_line('Simon 01') is None assert d.parse_format_line('Betty 10') is None assert d.parse_format_line('Louise 11') is None assert d.parse_format_line(' ;') is None assert d.parse_format_line('End;') is None
def test_parse_format_line_returns_none(self): d = DataHandler() assert d.parse_format_line('#NEXUS ') is None assert d.parse_format_line('') is None assert d.parse_format_line('Begin data;') is None assert d.parse_format_line('Dimensions ntax=4 nchar=2;') is None assert d.parse_format_line('Matrix') is None assert d.parse_format_line('Harry 00') is None assert d.parse_format_line('Simon 01') is None assert d.parse_format_line('Betty 10') is None assert d.parse_format_line('Louise 11') is None assert d.parse_format_line(' ;') is None assert d.parse_format_line('End;') is None
def test_parse_format_line(self): d = DataHandler() f = d.parse_format_line('Format datatype=standard gap=- symbols="01";') assert f['datatype'] == 'standard', \ "Expected 'standard', but got '%s'" % f['datatype'] assert f['symbols'] == '01', \ "Expected '01', but got '%s'" % f['symbols'] assert f['gap'] == '-', \ "Expected 'gap', but got '%s'" % f['gap'] fmt = 'FORMAT datatype=RNA missing=? symbols="ACGU" labels interleave;' f = d.parse_format_line(fmt) assert f['datatype'] == 'rna', \ "Expected 'rna', but got '%s'" % f['datatype'] assert f['missing'] == '?', \ "Expected '?', but got '%s'" % f['missing'] assert f['symbols'] == 'acgu', \ "Expected 'acgu', but got '%s'" % f['symbols'] assert f['labels'] is True, \ "Expected <True>, but got '%s'" % f['labels'] assert f['interleave'] is True, \ "Expected <True>, but got '%s'" % f['interleave']