def get(self):
session = app.session_maker()
query = session.query(Sample)
args = self.reqparse.parse_args()
# build a dictionary and then unpack it into
# the filter_by arguments using **
kwargs = {}
limit = args.get('limit')
offset = args.get('offset')
for k, v in args.iteritems():
if v != None and k != 'limit' and k != 'offset' and (
(type(v) == str and len(v) > 0) or (type(v) == int and v > 0)):
kwargs[k] = v
if len(kwargs) > 0:
print "Applying ", len(kwargs), " filters"
query = query.filter_by(**kwargs)
return {
'samples':
marshal(query.limit(limit).offset(offset).all(), sample_uris),
'sample_count':
query.count(),
'next_page':
'/ngssm/api/v1.0/samples?limit=' + str(limit) + '&offset=' +
str(offset + limit)
}
def get(self, id):
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first()
print "Sample id: ", id, " Sample: ", sample
if sample == None:
abort(404)
return {'sample': marshal(sample, sample_fields)}
def get(self, id):
session = app.session_maker()
run = session.query(Run).filter_by(id=id).first();
print "Run id: ", id, " Run: ", run
if run == None:
abort(404)
return { 'run': marshal(run, run_fields) }
def get(self, id):
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first();
print "Sample id: ", id, " Sample: ", sample
if sample == None:
abort(404)
return { 'sample': marshal(sample, sample_fields) }
def delete(self, id):
session = app.session_maker()
run = session.query(Run).filter_by(id=id).first()
if run == None:
abort(404)
session.delete(run)
session.commit()
return { 'result': True }
def delete(self, id):
print "Received delete request for: ", id
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first()
if sample == None:
abort(404)
session.delete(sample)
session.commit()
return {'result': True}
def delete(self, id):
print "Received delete request for: ", id
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first()
if sample == None:
abort(404)
session.delete(sample)
session.commit()
return { 'result': True }
def post(self):
args = self.postreqparse.parse_args();
run = Run()
for k, v in args.iteritems():
if v != None:
setattr(run,k,v)
session = app.session_maker()
session.add(run)
session.commit()
return { 'run': marshal(run, run_fields) } , 201
def put(self, id):
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first()
args = self.reqparse.parse_args()
if sample == None:
abort(404)
for k, v in args.iteritems():
if v != None:
setattr(sample, k, v)
session.commit()
return {'sample': marshal(sample, sample_fields)}
def put(self, id):
session = app.session_maker()
run = session.query(Run).filter_by(id=id).first()
args = self.reqparse.parse_args();
if run == None:
abort(404)
for k, v in args.iteritems():
if v != None:
setattr(run,k,v)
session.commit()
return { 'run': marshal(run, run_fields) }
def put(self, id):
session = app.session_maker()
sample = session.query(Sample).filter_by(id=id).first()
args = self.reqparse.parse_args();
if sample == None:
abort(404)
for k, v in args.iteritems():
if v != None:
setattr(sample,k,v)
session.commit()
return { 'sample': marshal(sample, sample_fields) }
def post(self):
args = self.postreqparse.parse_args()
if not 'run_id' in args:
abort(400)
sample = Sample()
for k, v in args.iteritems():
if v != None:
setattr(sample, k, v)
session = app.session_maker()
session.add(sample)
session.commit()
return {'sample': marshal(sample, sample_fields)}, 201
def post(self):
args = self.postreqparse.parse_args();
if not 'run_id' in args:
abort(400)
sample = Sample()
for k, v in args.iteritems():
if v != None:
setattr(sample,k,v)
session = app.session_maker()
session.add(sample)
session.commit()
return { 'sample': marshal(sample, sample_fields) } , 201
def get(self):
session = app.session_maker()
query = session.query(Sample)
args = self.reqparse.parse_args();
# build a dictionary and then unpack it into
# the filter_by arguments using **
kwargs = {}
for k, v in args.iteritems():
if v != None and len(v) > 0:
kwargs[k]=v
if len(kwargs) > 0:
print "Applying ", len(kwargs), " filters"
query = query.filter_by(**kwargs)
return { 'samples': marshal(query.all(), sample_fields), 'samples_count': query.count() }
def get(self):
session = app.session_maker()
query = session.query(Run)
args = self.reqparse.parse_args();
# build a dictionary and then unpack it into
# the filter_by arguments using **
kwargs = {}
limit = args.get('limit')
offset = args.get('offset')
for k, v in args.iteritems():
if v != None and type(v) is str and len(v) > 0:
kwargs[k]=v
if len(kwargs) > 0:
print "Applying ", len(kwargs), " filters"
query = query.filter_by(**kwargs)
return { 'runs': marshal(query.limit(limit).offset(offset).all(), run_uris), 'run_count': query.count(), 'next_page': '/ngssm/api/v1.0/runs?limit=' + str(limit) + '&offset=' + str(offset + limit) }