def test_2d_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 1, 1, 2),
'label': (42, 42, 1, 1, 1)},
win_sizes={'image': (63, 63, 1),
'label': (30, 32, 1)},
border_size=(2, 3, 4))
# first dim cooresponds to subject id
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 1],
[1, 1, 0, 0, 64, 63, 1],
[1, 0, 1, 0, 63, 64, 1],
[1, 1, 1, 0, 64, 64, 1]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 30, 32, 1],
[1, 12, 0, 0, 42, 32, 1],
[1, 6, 0, 0, 36, 32, 1],
[1, 0, 10, 0, 30, 42, 1],
[1, 12, 10, 0, 42, 42, 1],
[1, 6, 10, 0, 36, 42, 1],
[1, 0, 5, 0, 30, 37, 1],
[1, 12, 5, 0, 42, 37, 1],
[1, 6, 5, 0, 36, 37, 1]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
pass
def test_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (42, 42, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (42, 41, 33)},
border_size=(2, 3, 4))
# first dim cooresponds to subject id
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 40],
[1, 0, 0, 24, 63, 63, 64],
[1, 0, 0, 12, 63, 63, 52],
[1, 1, 0, 0, 64, 63, 40],
[1, 1, 0, 24, 64, 63, 64],
[1, 1, 0, 12, 64, 63, 52],
[1, 0, 1, 0, 63, 64, 40],
[1, 0, 1, 24, 63, 64, 64],
[1, 0, 1, 12, 63, 64, 52],
[1, 1, 1, 0, 64, 64, 40],
[1, 1, 1, 24, 64, 64, 64],
[1, 1, 1, 12, 64, 64, 52]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 42, 41, 33],
[1, 0, 0, 9, 42, 41, 42],
[1, 0, 0, 4, 42, 41, 37],
[1, 0, 1, 0, 42, 42, 33],
[1, 0, 1, 9, 42, 42, 42],
[1, 0, 1, 4, 42, 42, 37]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
pass
def test_2d_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 1, 1, 2),
'label': (42, 42, 1, 1, 1)},
win_sizes={'image': (63, 63, 1),
'label': (30, 32, 1)},
border_size=(2, 3, 4))
# first dim corresponds to subject id
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 1],
[1, 1, 0, 0, 64, 63, 1],
[1, 0, 1, 0, 63, 64, 1],
[1, 1, 1, 0, 64, 64, 1]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 30, 32, 1],
[1, 12, 0, 0, 42, 32, 1],
[1, 6, 0, 0, 36, 32, 1],
[1, 0, 10, 0, 30, 42, 1],
[1, 12, 10, 0, 42, 42, 1],
[1, 6, 10, 0, 36, 42, 1],
[1, 0, 5, 0, 30, 37, 1],
[1, 12, 5, 0, 42, 37, 1],
[1, 6, 5, 0, 36, 37, 1]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
pass
def test_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (42, 42, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (42, 41, 33)},
border_size=(2, 3, 4))
# first dim corresponds to subject id
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 40],
[1, 0, 0, 24, 63, 63, 64],
[1, 0, 0, 12, 63, 63, 52],
[1, 1, 0, 0, 64, 63, 40],
[1, 1, 0, 24, 64, 63, 64],
[1, 1, 0, 12, 64, 63, 52],
[1, 0, 1, 0, 63, 64, 40],
[1, 0, 1, 24, 63, 64, 64],
[1, 0, 1, 12, 63, 64, 52],
[1, 1, 1, 0, 64, 64, 40],
[1, 1, 1, 24, 64, 64, 64],
[1, 1, 1, 12, 64, 64, 52]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 42, 41, 33],
[1, 0, 0, 9, 42, 41, 42],
[1, 0, 0, 4, 42, 41, 37],
[1, 0, 1, 0, 42, 42, 33],
[1, 0, 1, 9, 42, 42, 42],
[1, 0, 1, 4, 42, 42, 37]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
pass
def test_nopadding_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (64, 64, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (50, 62, 40)},
border_size=(-1, -1, -1))
coords_1 = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (64, 64, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (50, 62, 40)},
border_size=(0, 0, 0))
self.assertAllClose(coords['image'], coords_1['image'])
self.assertAllClose(coords['label'], coords_1['label'])
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 40],
[1, 0, 0, 24, 63, 63, 64],
[1, 0, 0, 12, 63, 63, 52],
[1, 1, 0, 0, 64, 63, 40],
[1, 1, 0, 24, 64, 63, 64],
[1, 1, 0, 12, 64, 63, 52],
[1, 0, 1, 0, 63, 64, 40],
[1, 0, 1, 24, 63, 64, 64],
[1, 0, 1, 12, 63, 64, 52],
[1, 1, 1, 0, 64, 64, 40],
[1, 1, 1, 24, 64, 64, 64],
[1, 1, 1, 12, 64, 64, 52]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 50, 62, 40],
[1, 0, 0, 2, 50, 62, 42],
[1, 0, 0, 1, 50, 62, 41],
[1, 14, 0, 0, 64, 62, 40],
[1, 14, 0, 2, 64, 62, 42],
[1, 14, 0, 1, 64, 62, 41],
[1, 7, 0, 0, 57, 62, 40],
[1, 7, 0, 2, 57, 62, 42],
[1, 7, 0, 1, 57, 62, 41],
[1, 0, 2, 0, 50, 64, 40],
[1, 0, 2, 2, 50, 64, 42],
[1, 0, 2, 1, 50, 64, 41],
[1, 14, 2, 0, 64, 64, 40],
[1, 14, 2, 2, 64, 64, 42],
[1, 14, 2, 1, 64, 64, 41],
[1, 7, 2, 0, 57, 64, 40],
[1, 7, 2, 2, 57, 64, 42],
[1, 7, 2, 1, 57, 64, 41],
[1, 0, 1, 0, 50, 63, 40],
[1, 0, 1, 2, 50, 63, 42],
[1, 0, 1, 1, 50, 63, 41],
[1, 14, 1, 0, 64, 63, 40],
[1, 14, 1, 2, 64, 63, 42],
[1, 14, 1, 1, 64, 63, 41],
[1, 7, 1, 0, 57, 63, 40],
[1, 7, 1, 2, 57, 63, 42],
[1, 7, 1, 1, 57, 63, 41]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
with self.assertRaisesRegexp(AssertionError, ""):
coords_1 = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (42, 42, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (80, 80, 33)},
border_size=(0, 0, 0))
def test_nopadding_coordinates(self):
coords = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (64, 64, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (50, 62, 40)},
border_size=(-1, -1, -1))
coords_1 = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (64, 64, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (50, 62, 40)},
border_size=(0, 0, 0))
self.assertAllClose(coords['image'], coords_1['image'])
self.assertAllClose(coords['label'], coords_1['label'])
expected_image = np.array(
[[1, 0, 0, 0, 63, 63, 40],
[1, 0, 0, 24, 63, 63, 64],
[1, 0, 0, 12, 63, 63, 52],
[1, 1, 0, 0, 64, 63, 40],
[1, 1, 0, 24, 64, 63, 64],
[1, 1, 0, 12, 64, 63, 52],
[1, 0, 1, 0, 63, 64, 40],
[1, 0, 1, 24, 63, 64, 64],
[1, 0, 1, 12, 63, 64, 52],
[1, 1, 1, 0, 64, 64, 40],
[1, 1, 1, 24, 64, 64, 64],
[1, 1, 1, 12, 64, 64, 52]], dtype=np.int32)
self.assertAllClose(coords['image'], expected_image)
expected_label = np.array(
[[1, 0, 0, 0, 50, 62, 40],
[1, 0, 0, 2, 50, 62, 42],
[1, 0, 0, 1, 50, 62, 41],
[1, 14, 0, 0, 64, 62, 40],
[1, 14, 0, 2, 64, 62, 42],
[1, 14, 0, 1, 64, 62, 41],
[1, 7, 0, 0, 57, 62, 40],
[1, 7, 0, 2, 57, 62, 42],
[1, 7, 0, 1, 57, 62, 41],
[1, 0, 2, 0, 50, 64, 40],
[1, 0, 2, 2, 50, 64, 42],
[1, 0, 2, 1, 50, 64, 41],
[1, 14, 2, 0, 64, 64, 40],
[1, 14, 2, 2, 64, 64, 42],
[1, 14, 2, 1, 64, 64, 41],
[1, 7, 2, 0, 57, 64, 40],
[1, 7, 2, 2, 57, 64, 42],
[1, 7, 2, 1, 57, 64, 41],
[1, 0, 1, 0, 50, 63, 40],
[1, 0, 1, 2, 50, 63, 42],
[1, 0, 1, 1, 50, 63, 41],
[1, 14, 1, 0, 64, 63, 40],
[1, 14, 1, 2, 64, 63, 42],
[1, 14, 1, 1, 64, 63, 41],
[1, 7, 1, 0, 57, 63, 40],
[1, 7, 1, 2, 57, 63, 42],
[1, 7, 1, 1, 57, 63, 41]], dtype=np.int32)
self.assertAllClose(coords['label'], expected_label)
with self.assertRaisesRegexp(AssertionError, ""):
coords_1 = grid_spatial_coordinates(
subject_id=1,
img_sizes={'image': (64, 64, 64, 1, 2),
'label': (42, 42, 42, 1, 1)},
win_sizes={'image': (63, 63, 40),
'label': (80, 80, 33)},
border_size=(0, 0, 0))