def test_2d_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 1, 1, 2), 'label': (42, 42, 1, 1, 1)}, win_sizes={'image': (63, 63, 1), 'label': (30, 32, 1)}, border_size=(2, 3, 4)) # first dim cooresponds to subject id expected_image = np.array( [[1, 0, 0, 0, 63, 63, 1], [1, 1, 0, 0, 64, 63, 1], [1, 0, 1, 0, 63, 64, 1], [1, 1, 1, 0, 64, 64, 1]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 30, 32, 1], [1, 12, 0, 0, 42, 32, 1], [1, 6, 0, 0, 36, 32, 1], [1, 0, 10, 0, 30, 42, 1], [1, 12, 10, 0, 42, 42, 1], [1, 6, 10, 0, 36, 42, 1], [1, 0, 5, 0, 30, 37, 1], [1, 12, 5, 0, 42, 37, 1], [1, 6, 5, 0, 36, 37, 1]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) pass
def test_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (42, 42, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (42, 41, 33)}, border_size=(2, 3, 4)) # first dim cooresponds to subject id expected_image = np.array( [[1, 0, 0, 0, 63, 63, 40], [1, 0, 0, 24, 63, 63, 64], [1, 0, 0, 12, 63, 63, 52], [1, 1, 0, 0, 64, 63, 40], [1, 1, 0, 24, 64, 63, 64], [1, 1, 0, 12, 64, 63, 52], [1, 0, 1, 0, 63, 64, 40], [1, 0, 1, 24, 63, 64, 64], [1, 0, 1, 12, 63, 64, 52], [1, 1, 1, 0, 64, 64, 40], [1, 1, 1, 24, 64, 64, 64], [1, 1, 1, 12, 64, 64, 52]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 42, 41, 33], [1, 0, 0, 9, 42, 41, 42], [1, 0, 0, 4, 42, 41, 37], [1, 0, 1, 0, 42, 42, 33], [1, 0, 1, 9, 42, 42, 42], [1, 0, 1, 4, 42, 42, 37]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) pass
def test_2d_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 1, 1, 2), 'label': (42, 42, 1, 1, 1)}, win_sizes={'image': (63, 63, 1), 'label': (30, 32, 1)}, border_size=(2, 3, 4)) # first dim corresponds to subject id expected_image = np.array( [[1, 0, 0, 0, 63, 63, 1], [1, 1, 0, 0, 64, 63, 1], [1, 0, 1, 0, 63, 64, 1], [1, 1, 1, 0, 64, 64, 1]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 30, 32, 1], [1, 12, 0, 0, 42, 32, 1], [1, 6, 0, 0, 36, 32, 1], [1, 0, 10, 0, 30, 42, 1], [1, 12, 10, 0, 42, 42, 1], [1, 6, 10, 0, 36, 42, 1], [1, 0, 5, 0, 30, 37, 1], [1, 12, 5, 0, 42, 37, 1], [1, 6, 5, 0, 36, 37, 1]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) pass
def test_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (42, 42, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (42, 41, 33)}, border_size=(2, 3, 4)) # first dim corresponds to subject id expected_image = np.array( [[1, 0, 0, 0, 63, 63, 40], [1, 0, 0, 24, 63, 63, 64], [1, 0, 0, 12, 63, 63, 52], [1, 1, 0, 0, 64, 63, 40], [1, 1, 0, 24, 64, 63, 64], [1, 1, 0, 12, 64, 63, 52], [1, 0, 1, 0, 63, 64, 40], [1, 0, 1, 24, 63, 64, 64], [1, 0, 1, 12, 63, 64, 52], [1, 1, 1, 0, 64, 64, 40], [1, 1, 1, 24, 64, 64, 64], [1, 1, 1, 12, 64, 64, 52]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 42, 41, 33], [1, 0, 0, 9, 42, 41, 42], [1, 0, 0, 4, 42, 41, 37], [1, 0, 1, 0, 42, 42, 33], [1, 0, 1, 9, 42, 42, 42], [1, 0, 1, 4, 42, 42, 37]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) pass
def test_nopadding_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (64, 64, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (50, 62, 40)}, border_size=(-1, -1, -1)) coords_1 = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (64, 64, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (50, 62, 40)}, border_size=(0, 0, 0)) self.assertAllClose(coords['image'], coords_1['image']) self.assertAllClose(coords['label'], coords_1['label']) expected_image = np.array( [[1, 0, 0, 0, 63, 63, 40], [1, 0, 0, 24, 63, 63, 64], [1, 0, 0, 12, 63, 63, 52], [1, 1, 0, 0, 64, 63, 40], [1, 1, 0, 24, 64, 63, 64], [1, 1, 0, 12, 64, 63, 52], [1, 0, 1, 0, 63, 64, 40], [1, 0, 1, 24, 63, 64, 64], [1, 0, 1, 12, 63, 64, 52], [1, 1, 1, 0, 64, 64, 40], [1, 1, 1, 24, 64, 64, 64], [1, 1, 1, 12, 64, 64, 52]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 50, 62, 40], [1, 0, 0, 2, 50, 62, 42], [1, 0, 0, 1, 50, 62, 41], [1, 14, 0, 0, 64, 62, 40], [1, 14, 0, 2, 64, 62, 42], [1, 14, 0, 1, 64, 62, 41], [1, 7, 0, 0, 57, 62, 40], [1, 7, 0, 2, 57, 62, 42], [1, 7, 0, 1, 57, 62, 41], [1, 0, 2, 0, 50, 64, 40], [1, 0, 2, 2, 50, 64, 42], [1, 0, 2, 1, 50, 64, 41], [1, 14, 2, 0, 64, 64, 40], [1, 14, 2, 2, 64, 64, 42], [1, 14, 2, 1, 64, 64, 41], [1, 7, 2, 0, 57, 64, 40], [1, 7, 2, 2, 57, 64, 42], [1, 7, 2, 1, 57, 64, 41], [1, 0, 1, 0, 50, 63, 40], [1, 0, 1, 2, 50, 63, 42], [1, 0, 1, 1, 50, 63, 41], [1, 14, 1, 0, 64, 63, 40], [1, 14, 1, 2, 64, 63, 42], [1, 14, 1, 1, 64, 63, 41], [1, 7, 1, 0, 57, 63, 40], [1, 7, 1, 2, 57, 63, 42], [1, 7, 1, 1, 57, 63, 41]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) with self.assertRaisesRegexp(AssertionError, ""): coords_1 = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (42, 42, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (80, 80, 33)}, border_size=(0, 0, 0))
def test_nopadding_coordinates(self): coords = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (64, 64, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (50, 62, 40)}, border_size=(-1, -1, -1)) coords_1 = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (64, 64, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (50, 62, 40)}, border_size=(0, 0, 0)) self.assertAllClose(coords['image'], coords_1['image']) self.assertAllClose(coords['label'], coords_1['label']) expected_image = np.array( [[1, 0, 0, 0, 63, 63, 40], [1, 0, 0, 24, 63, 63, 64], [1, 0, 0, 12, 63, 63, 52], [1, 1, 0, 0, 64, 63, 40], [1, 1, 0, 24, 64, 63, 64], [1, 1, 0, 12, 64, 63, 52], [1, 0, 1, 0, 63, 64, 40], [1, 0, 1, 24, 63, 64, 64], [1, 0, 1, 12, 63, 64, 52], [1, 1, 1, 0, 64, 64, 40], [1, 1, 1, 24, 64, 64, 64], [1, 1, 1, 12, 64, 64, 52]], dtype=np.int32) self.assertAllClose(coords['image'], expected_image) expected_label = np.array( [[1, 0, 0, 0, 50, 62, 40], [1, 0, 0, 2, 50, 62, 42], [1, 0, 0, 1, 50, 62, 41], [1, 14, 0, 0, 64, 62, 40], [1, 14, 0, 2, 64, 62, 42], [1, 14, 0, 1, 64, 62, 41], [1, 7, 0, 0, 57, 62, 40], [1, 7, 0, 2, 57, 62, 42], [1, 7, 0, 1, 57, 62, 41], [1, 0, 2, 0, 50, 64, 40], [1, 0, 2, 2, 50, 64, 42], [1, 0, 2, 1, 50, 64, 41], [1, 14, 2, 0, 64, 64, 40], [1, 14, 2, 2, 64, 64, 42], [1, 14, 2, 1, 64, 64, 41], [1, 7, 2, 0, 57, 64, 40], [1, 7, 2, 2, 57, 64, 42], [1, 7, 2, 1, 57, 64, 41], [1, 0, 1, 0, 50, 63, 40], [1, 0, 1, 2, 50, 63, 42], [1, 0, 1, 1, 50, 63, 41], [1, 14, 1, 0, 64, 63, 40], [1, 14, 1, 2, 64, 63, 42], [1, 14, 1, 1, 64, 63, 41], [1, 7, 1, 0, 57, 63, 40], [1, 7, 1, 2, 57, 63, 42], [1, 7, 1, 1, 57, 63, 41]], dtype=np.int32) self.assertAllClose(coords['label'], expected_label) with self.assertRaisesRegexp(AssertionError, ""): coords_1 = grid_spatial_coordinates( subject_id=1, img_sizes={'image': (64, 64, 64, 1, 2), 'label': (42, 42, 42, 1, 1)}, win_sizes={'image': (63, 63, 40), 'label': (80, 80, 33)}, border_size=(0, 0, 0))