def test_BaseInterface_load_save_inputs():
tmp_dir = tempfile.mkdtemp()
tmp_json = os.path.join(tmp_dir, 'settings.json')
class InputSpec(nib.TraitedSpec):
input1 = nib.traits.Int()
input2 = nib.traits.Float()
input3 = nib.traits.Bool()
input4 = nib.traits.Str()
class DerivedInterface(nib.BaseInterface):
input_spec = InputSpec
def __init__(self, **inputs):
super(DerivedInterface, self).__init__(**inputs)
inputs_dict = {'input1': 12, 'input3': True, 'input4': 'some string'}
bif = DerivedInterface(**inputs_dict)
bif.save_inputs_to_json(tmp_json)
bif2 = DerivedInterface()
bif2.load_inputs_from_json(tmp_json)
yield assert_equal, bif2.inputs.get_traitsfree(), inputs_dict
bif3 = DerivedInterface(from_file=tmp_json)
yield assert_equal, bif3.inputs.get_traitsfree(), inputs_dict
inputs_dict2 = inputs_dict.copy()
inputs_dict2.update({'input4': 'some other string'})
bif4 = DerivedInterface(from_file=tmp_json, input4=inputs_dict2['input4'])
yield assert_equal, bif4.inputs.get_traitsfree(), inputs_dict2
bif5 = DerivedInterface(input4=inputs_dict2['input4'])
bif5.load_inputs_from_json(tmp_json, overwrite=False)
yield assert_equal, bif5.inputs.get_traitsfree(), inputs_dict2
bif6 = DerivedInterface(input4=inputs_dict2['input4'])
bif6.load_inputs_from_json(tmp_json)
yield assert_equal, bif6.inputs.get_traitsfree(), inputs_dict
# test get hashval in a complex interface
from nipype.interfaces.ants import Registration
settings = example_data(
example_data('smri_ants_registration_settings.json'))
with open(settings) as setf:
data_dict = json.load(setf)
tsthash = Registration()
tsthash.load_inputs_from_json(settings)
yield assert_equal, {}, check_dict(data_dict,
tsthash.inputs.get_traitsfree())
tsthash2 = Registration(from_file=settings)
yield assert_equal, {}, check_dict(data_dict,
tsthash2.inputs.get_traitsfree())
_, hashvalue = tsthash.inputs.get_hashval(hash_method='timestamp')
yield assert_equal, 'ec5755e07287e04a4b409e03b77a517c', hashvalue
def test_BaseInterface_load_save_inputs():
tmp_dir = tempfile.mkdtemp()
tmp_json = os.path.join(tmp_dir, 'settings.json')
class InputSpec(nib.TraitedSpec):
input1 = nib.traits.Int()
input2 = nib.traits.Float()
input3 = nib.traits.Bool()
input4 = nib.traits.Str()
class DerivedInterface(nib.BaseInterface):
input_spec = InputSpec
def __init__(self, **inputs):
super(DerivedInterface, self).__init__(**inputs)
inputs_dict = {'input1': 12, 'input3': True,
'input4': 'some string'}
bif = DerivedInterface(**inputs_dict)
bif.save_inputs_to_json(tmp_json)
bif2 = DerivedInterface()
bif2.load_inputs_from_json(tmp_json)
yield assert_equal, bif2.inputs.get_traitsfree(), inputs_dict
bif3 = DerivedInterface(from_file=tmp_json)
yield assert_equal, bif3.inputs.get_traitsfree(), inputs_dict
inputs_dict2 = inputs_dict.copy()
inputs_dict2.update({'input4': 'some other string'})
bif4 = DerivedInterface(from_file=tmp_json, input4=inputs_dict2['input4'])
yield assert_equal, bif4.inputs.get_traitsfree(), inputs_dict2
bif5 = DerivedInterface(input4=inputs_dict2['input4'])
bif5.load_inputs_from_json(tmp_json, overwrite=False)
yield assert_equal, bif5.inputs.get_traitsfree(), inputs_dict2
bif6 = DerivedInterface(input4=inputs_dict2['input4'])
bif6.load_inputs_from_json(tmp_json)
yield assert_equal, bif6.inputs.get_traitsfree(), inputs_dict
# test get hashval in a complex interface
from nipype.interfaces.ants import Registration
settings = example_data(example_data('smri_ants_registration_settings.json'))
with open(settings) as setf:
data_dict = json.load(setf)
tsthash = Registration()
tsthash.load_inputs_from_json(settings)
yield assert_equal, {}, check_dict(data_dict, tsthash.inputs.get_traitsfree())
tsthash2 = Registration(from_file=settings)
yield assert_equal, {}, check_dict(data_dict, tsthash2.inputs.get_traitsfree())
_, hashvalue = tsthash.inputs.get_hashval(hash_method='timestamp')
yield assert_equal, 'ec5755e07287e04a4b409e03b77a517c', hashvalue
def test_BaseInterface_load_save_inputs(tmpdir):
tmp_json = tmpdir.join("settings.json").strpath
class InputSpec(nib.TraitedSpec):
input1 = nib.traits.Int()
input2 = nib.traits.Float()
input3 = nib.traits.Bool()
input4 = nib.traits.Str()
class DerivedInterface(nib.BaseInterface):
input_spec = InputSpec
def __init__(self, **inputs):
super(DerivedInterface, self).__init__(**inputs)
inputs_dict = {"input1": 12, "input3": True, "input4": "some string"}
bif = DerivedInterface(**inputs_dict)
bif.save_inputs_to_json(tmp_json)
bif2 = DerivedInterface()
bif2.load_inputs_from_json(tmp_json)
assert bif2.inputs.get_traitsfree() == inputs_dict
bif3 = DerivedInterface(from_file=tmp_json)
assert bif3.inputs.get_traitsfree() == inputs_dict
inputs_dict2 = inputs_dict.copy()
inputs_dict2.update({"input4": "some other string"})
bif4 = DerivedInterface(from_file=tmp_json, input4=inputs_dict2["input4"])
assert bif4.inputs.get_traitsfree() == inputs_dict2
bif5 = DerivedInterface(input4=inputs_dict2["input4"])
bif5.load_inputs_from_json(tmp_json, overwrite=False)
assert bif5.inputs.get_traitsfree() == inputs_dict2
bif6 = DerivedInterface(input4=inputs_dict2["input4"])
bif6.load_inputs_from_json(tmp_json)
assert bif6.inputs.get_traitsfree() == inputs_dict
# test get hashval in a complex interface
from nipype.interfaces.ants import Registration
settings = example_data(
example_data("smri_ants_registration_settings.json"))
with open(settings) as setf:
data_dict = json.load(setf)
tsthash = Registration()
tsthash.load_inputs_from_json(settings)
assert {} == check_dict(data_dict, tsthash.inputs.get_traitsfree())
tsthash2 = Registration(from_file=settings)
assert {} == check_dict(data_dict, tsthash2.inputs.get_traitsfree())
_, hashvalue = tsthash.inputs.get_hashval(hash_method="timestamp")
assert hashvalue == "e35bf07fea8049cc02de9235f85e8903"
def test_BaseInterface_load_save_inputs(tmpdir):
tmp_json = tmpdir.join('settings.json').strpath
class InputSpec(nib.TraitedSpec):
input1 = nib.traits.Int()
input2 = nib.traits.Float()
input3 = nib.traits.Bool()
input4 = nib.traits.Str()
class DerivedInterface(nib.BaseInterface):
input_spec = InputSpec
def __init__(self, **inputs):
super(DerivedInterface, self).__init__(**inputs)
inputs_dict = {'input1': 12, 'input3': True, 'input4': 'some string'}
bif = DerivedInterface(**inputs_dict)
bif.save_inputs_to_json(tmp_json)
bif2 = DerivedInterface()
bif2.load_inputs_from_json(tmp_json)
assert bif2.inputs.get_traitsfree() == inputs_dict
bif3 = DerivedInterface(from_file=tmp_json)
assert bif3.inputs.get_traitsfree() == inputs_dict
inputs_dict2 = inputs_dict.copy()
inputs_dict2.update({'input4': 'some other string'})
bif4 = DerivedInterface(from_file=tmp_json, input4=inputs_dict2['input4'])
assert bif4.inputs.get_traitsfree() == inputs_dict2
bif5 = DerivedInterface(input4=inputs_dict2['input4'])
bif5.load_inputs_from_json(tmp_json, overwrite=False)
assert bif5.inputs.get_traitsfree() == inputs_dict2
bif6 = DerivedInterface(input4=inputs_dict2['input4'])
bif6.load_inputs_from_json(tmp_json)
assert bif6.inputs.get_traitsfree() == inputs_dict
# test get hashval in a complex interface
from nipype.interfaces.ants import Registration
settings = example_data(
example_data('smri_ants_registration_settings.json'))
with open(settings) as setf:
data_dict = json.load(setf)
tsthash = Registration()
tsthash.load_inputs_from_json(settings)
assert {} == check_dict(data_dict, tsthash.inputs.get_traitsfree())
tsthash2 = Registration(from_file=settings)
assert {} == check_dict(data_dict, tsthash2.inputs.get_traitsfree())
_, hashvalue = tsthash.inputs.get_hashval(hash_method='timestamp')
assert '8562a5623562a871115eb14822ee8d02' == hashvalue
def test_BaseInterface_load_save_inputs(tmpdir):
tmp_json = tmpdir.join('settings.json').strpath
class InputSpec(nib.TraitedSpec):
input1 = nib.traits.Int()
input2 = nib.traits.Float()
input3 = nib.traits.Bool()
input4 = nib.traits.Str()
class DerivedInterface(nib.BaseInterface):
input_spec = InputSpec
def __init__(self, **inputs):
super(DerivedInterface, self).__init__(**inputs)
inputs_dict = {'input1': 12, 'input3': True, 'input4': 'some string'}
bif = DerivedInterface(**inputs_dict)
bif.save_inputs_to_json(tmp_json)
bif2 = DerivedInterface()
bif2.load_inputs_from_json(tmp_json)
assert bif2.inputs.get_traitsfree() == inputs_dict
bif3 = DerivedInterface(from_file=tmp_json)
assert bif3.inputs.get_traitsfree() == inputs_dict
inputs_dict2 = inputs_dict.copy()
inputs_dict2.update({'input4': 'some other string'})
bif4 = DerivedInterface(from_file=tmp_json, input4=inputs_dict2['input4'])
assert bif4.inputs.get_traitsfree() == inputs_dict2
bif5 = DerivedInterface(input4=inputs_dict2['input4'])
bif5.load_inputs_from_json(tmp_json, overwrite=False)
assert bif5.inputs.get_traitsfree() == inputs_dict2
bif6 = DerivedInterface(input4=inputs_dict2['input4'])
bif6.load_inputs_from_json(tmp_json)
assert bif6.inputs.get_traitsfree() == inputs_dict
# test get hashval in a complex interface
from nipype.interfaces.ants import Registration
settings = example_data(
example_data('smri_ants_registration_settings.json'))
with open(settings) as setf:
data_dict = json.load(setf)
tsthash = Registration()
tsthash.load_inputs_from_json(settings)
assert {} == check_dict(data_dict, tsthash.inputs.get_traitsfree())
tsthash2 = Registration(from_file=settings)
assert {} == check_dict(data_dict, tsthash2.inputs.get_traitsfree())
_, hashvalue = tsthash.inputs.get_hashval(hash_method='timestamp')
assert '8562a5623562a871115eb14822ee8d02' == hashvalue