def _generate_report(self):
from niworkflows.viz.utils import plot_melodic_components
plot_melodic_components(melodic_dir=self._melodic_dir,
in_file=self.inputs.in_files[0],
tr=self.inputs.tr_sec,
out_file=self._out_report,
compress=self.inputs.compress_report,
report_mask=self.inputs.report_mask)
def _generate_report(self):
from niworkflows.viz.utils import plot_melodic_components
plot_melodic_components(melodic_dir=self._melodic_dir,
in_file=self.inputs.in_files[0],
tr=self.inputs.tr_sec,
out_file=self.inputs.out_report,
compress=self.inputs.compress_report,
report_mask=self.inputs.report_mask)
def _generate_report(self):
from niworkflows.viz.utils import plot_melodic_components
plot_melodic_components(melodic_dir=self.inputs.melodic_dir,
in_file=self.inputs.in_file,
out_file=self.inputs.out_report,
compress=self.inputs.compress_report,
report_mask=self.inputs.report_mask,
noise_components_file=self._noise_components_file
)
def _generate_report(self):
from niworkflows.viz.utils import plot_melodic_components
plot_melodic_components(melodic_dir=self.inputs.melodic_dir,
in_file=self.inputs.in_file,
out_file=self.inputs.out_report,
compress=self.inputs.compress_report,
report_mask=self.inputs.report_mask,
noise_components_file=self._noise_components_file
)
def _generate_report(self):
from niworkflows.viz.utils import plot_melodic_components
mix = os.path.join(self._melodic_dir, "melodic_mix")
if not os.path.exists(mix):
self._out_report = self.inputs.out_report.replace('svg', 'html')
snippet = '<h4>MELODIC did not converge, no output</h4>'
with open(self._out_report, 'w') as fobj:
fobj.write(snippet)
return
plot_melodic_components(melodic_dir=self._melodic_dir,
in_file=self.inputs.in_files[0],
tr=self.inputs.tr_sec,
out_file=self.inputs.out_report,
compress=self.inputs.compress_report,
report_mask=self.inputs.report_mask)