tick_width,
'xtick.direction':
'out',
'ytick.major.size':
tick_len,
'ytick.major.width':
tick_width,
'ytick.minor.size':
tick_len / 2.,
'ytick.minor.width':
tick_width,
'ytick.direction':
'out',
},
'GridExampleRectPlotter': {
'fig_saver': SeparateMultipageSaver(None, 'pdf')
},
'MainBumpFormationPlotter': {
'plot_grid_contours': [0, 0, 0],
'ann': [None, None, None],
},
'GammaSweepsPlotter': {
'AC_vmin': -0.15,
'AC_vmax': 0.6,
'F_vmin': 30,
'F_vmax': 142.9,
'F_cbar_kw': dict(extend='neither', ),
},
'MaxPopulationFRSweepsPlotter': {},
'PSeizureSweepPlotter': {
'FRThreshold': 300,
output_dir_0 = join('simulation_data', 'ee_connections_ei_flat',
'standard_sweep_g_EE_3060_pEE_sigma_0_0833',
'gamma_bump', '0pA')
sp_0 = JobTrialSpace2D(shape, output_dir_0)
new_config = deepcopy(config.get_config())
env = MplEnvironment(config=new_config)
env.register_class(noisefigs.plotters.PopulationActivityPlotter,
config={
'data_root': output_dir_0,
'data_file_name': sp_0[1][22].file_name_base,
'output_dir': 'panels_standard_gEE_3060',
'PopulationActivityPlotter': {
'fname_prefix': '0pA_r1_c22_',
'raster_rect': (.075, 0.35, 0.93, 0.97),
'fig_saver':
SeparateMultipageSaver(None, 'pdf'),
'fig_size': (8, 6),
't_limits': (0, 5e3),
'snapshot_tstep': 4,
'e_snapshots_rect': (.075, .15, 0.93, 0.25),
'i_snapshots_rect': (.075, .02, 0.93, 0.12),
},
})
env.plot()
output_dir = join('simulation_data', 'ee_connections_ei_flat',
'standard_sweep_g_EE_3060_pEE_sigma_0_0833',
'gamma_bump', '150pA')
sp = JobTrialSpace2D(shape, output_dir)
new_config = deepcopy(config.get_config())
env = MplEnvironment(config=new_config)
def get_config():
'''Return the configuration object.'''
_default_config = ConfigObj()
_default_config.merge({
'scale_factor': scale_factor,
'data_root': 'simulation_data/network_test/10s_4trials/150pA',
'data_file_name': 'job00000_output.h5',
'output_dir': 'panels/',
# Sections
'mpl': {
'font.size':
11,
'pdf.fonttype':
42,
'mathtext.default':
'regular',
'font.sans-serif':
['Helvetica', 'Avant Garde', 'Computer Modern Sans serif'],
'xtick.major.size':
tick_len,
'xtick.major.width':
tick_width,
'xtick.minor.size':
tick_len / 2.,
'xtick.minor.width':
tick_width,
'xtick.direction':
'out',
'ytick.major.size':
tick_len,
'ytick.major.width':
tick_width,
'ytick.minor.size':
tick_len / 2.,
'ytick.minor.width':
tick_width,
'ytick.direction':
'out',
},
'PopulationActivityPlotter': {
'raster_rect': (.075, 0.35, 0.99, 0.97),
'fig_saver': SeparateMultipageSaver(None, 'pdf'),
'fig_size': (15, 6),
't_limits': (0, 10e3),
'snapshot_tstep': 4,
'e_snapshots_rect': (.075, .15, 0.99, 0.25),
'i_snapshots_rect': (.075, .02, 0.99, 0.1),
},
'Generic1DPBumpPlotter': {
'normalize_ticks': True,
'normalize_type': 'I',
'xlabel': '$g_{I{\\rightarrow}I}$',
'ylabel': 'P(bumps)',
'bbox': (.2, .17, .85, .9),
'xticks': [True] * 3,
'yticks': [True] * 3,
'axis_setting': 'tight',
},
'Generic1DGammaPlotter': {
'normalize_ticks': True,
'normalize_type': 'I',
'xlabel': '$g_{I{\\rightarrow}I}$',
'ylabel': '',
'bbox': (.2, .17, .85, .9),
'xticks': [True] * 3,
'yticks': [True] * 3,
'axis_setting': 'tight',
},
})
##########################################################################
return _default_config