def test_infos(input_description, codes):
assert codes == [
info["code"] for info in name_check(input_description)["infos"]
]
def test_ensembl(input_description, normalized):
d = name_check(input_description)
assert d["normalized_description"] == normalized
def test_protein_equivalent(input_description, coding_protein_descriptions):
normalized_output = name_check(input_description)
normalizer_descriptions = set(
normalized_output["equivalent_descriptions"]["c"])
assert coding_protein_descriptions.issubset(normalizer_descriptions)
def test_errors(input_description, codes):
assert codes == [
error["code"] for error in name_check(input_description)["errors"]
]
def test_protein(input_description, protein_description):
normalized_output = name_check(input_description)
normalizer_protein = normalized_output["protein"]["description"]
assert normalizer_protein == protein_description
def test_coding(input_description, coding):
d = name_check(input_description)
coding = [c[0] for c in coding]
if d["equivalent_descriptions"].get("c"):
name_check_coding = [c[0] for c in d["equivalent_descriptions"]["c"]]
assert set(coding).issubset(set(name_check_coding))
def test_genomic(input_description, genomic):
d = name_check(input_description)
if d["equivalent_descriptions"].get("g"):
assert d["equivalent_descriptions"]["g"][0] == genomic
def test_no_errors(input_description):
assert name_check(input_description).get("errors") is None
def test_error(input_description, code):
assert code_in(code, name_check(input_description)["errors"])