Python variant_range_tuple Beispiele

Beispiel #1

Datei: variant_utils_test.py Projekt: yijunyu/nucleus

 def test_variant_position_and_range(self):
   v1 = test_utils.make_variant(chrom='1', alleles=['A', 'C'], start=10)
   v2 = test_utils.make_variant(chrom='1', alleles=['AGCT', 'C'], start=10)
   pos = ranges.make_range('1', 10, 11)
   range_ = ranges.make_range('1', 10, 14)
   v1_range_tuple = ('1', 10, 11)
   v2_range_tuple = ('1', 10, 14)
   self.assertEqual(pos, variant_utils.variant_position(v1))
   self.assertEqual(pos, variant_utils.variant_position(v2))
   self.assertEqual(pos, variant_utils.variant_range(v1))
   self.assertEqual(range_, variant_utils.variant_range(v2))
   self.assertEqual(v1_range_tuple, variant_utils.variant_range_tuple(v1))
   self.assertEqual(v2_range_tuple, variant_utils.variant_range_tuple(v2))

Beispiel #2

Datei: variant_utils_test.py Projekt: yijunyu/nucleus

 def _range_tuples(variants):
   return [variant_utils.variant_range_tuple(v) for v in variants]