def biobank_monthly_reconciliation_report():
# make sure this cron job is executed after import_biobank_samples
timestamp = biobank_samples_pipeline.get_last_biobank_sample_file_info()[2]
logging.info('Generating monthly reconciliation report.')
biobank_samples_pipeline.write_reconciliation_report(timestamp, 'monthly')
logging.info('Generated monthly reconciliation report.')
return json.dumps({'monthly-reconciliation-report': 'generated'})
def import_biobank_samples():
# Note that crons always have a 10 minute deadline instead of the normal 60s; additionally our
# offline service uses basic scaling with has no deadline.
logging.info('Starting samples import.')
written, timestamp = biobank_samples_pipeline.upsert_from_latest_csv()
logging.info('Import complete (%d written), generating report.', written)
logging.info('Generating reconciliation report.')
biobank_samples_pipeline.write_reconciliation_report(timestamp)
logging.info('Generated reconciliation report.')
return json.dumps({'written': written})
