def test_string_list_map(self):
src = {'hello': ['HELLO'], 'world': ['WORLD']}
output = BinaryOutput()
output.dump_string_list_map(src)
input = BinaryInput(output.result())
result = input.load_string_list_map()
self.assertEqual('HELLO', result['hello'][0])
self.assertEqual('WORLD', result['world'][0])
def test_string_list_map(self):
src = {'hello': ['HELLO'], 'world': ['WORLD']}
output = BinaryOutput()
output.dump_string_list_map(src)
input = BinaryInput(output.result())
result = input.load_string_list_map()
self.assertEqual('HELLO', result['hello'][0])
self.assertEqual('WORLD', result['world'][0])
def test_load_dump_and_get(self):
dump1 = BinaryOutput();
dump0 = BinaryOutput();
self.bv1.dump(dump1)
self.bv0.dump(dump0)
self.bv1.load(BinaryInput(dump1.result()))
self.bv0.load(BinaryInput(dump0.result()))
for v in self.src_values:
self.assertTrue(self.bv1.get(v))
self.assertFalse(self.bv0.get(v))
def test_load_dump_and_select(self):
dump1 = BinaryOutput();
dump0 = BinaryOutput();
self.bv1.dump(dump1)
self.bv0.dump(dump0)
self.bv1.load(BinaryInput(dump1.result()))
self.bv0.load(BinaryInput(dump0.result()))
for i, v in enumerate(self.src_values):
self.assertEqual(v, self.bv1.select(i, True))
self.assertEqual(v, self.bv0.select(i, False))
def test_load_dump_and_size(self):
dump1 = BinaryOutput();
dump0 = BinaryOutput();
self.bv1.dump(dump1)
self.bv0.dump(dump0)
self.bv1.load(BinaryInput(dump1.result()))
self.bv0.load(BinaryInput(dump0.result()))
self.assertEqual(self.src_values[-1] + 1, self.bv1.size())
self.assertEqual(len(self.src_values), self.bv1.size1())
self.assertEqual(self.src_values[-1] + 1, self.bv0.size())
self.assertEqual(len(self.src_values), self.bv0.size0())
def test_32bit_number_list_blank(self):
list = [0, 0, 0, 0, 0, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual((2 + 1) * 2, len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(0, result[0])
self.assertEqual(0, result[5])
self.assertEqual((2 + 1) * 2, input._offset)
def test_32bit_number_list_blank(self):
list = [0, 0, 0, 0, 0, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual((2 + 1) * 2, len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(0, result[0])
self.assertEqual(0, result[5])
self.assertEqual((2 + 1) * 2, input._offset)
def test_32bit_number_list_non_blank(self):
list = [1, 1, 1, 1, 1, 1]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 * 6 + 2 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[5])
self.assertEqual(2 * (2 * 6 + 2 + 1), input._offset)
def test_32bit_number_list_non_blank(self):
list = [1, 1, 1, 1, 1, 1]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 * 6 + 2 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[5])
self.assertEqual(2 * (2 * 6 + 2 + 1), input._offset)
def test_string_list(self):
output1 = BinaryOutput()
output1.dump_string_list(['hello', 'world'])
input1 = BinaryInput(output1.result())
result1 = input1.load_string_list()
self.assertEqual('hello', result1[0])
self.assertEqual('world', result1[1])
output2 = BinaryOutput()
output2.dump_string_list(['\u1112', '\u1113'])
input2 = BinaryInput(output2.result())
result2 = input2.load_string_list()
self.assertEqual('\u1112', result2[0])
self.assertEqual('\u1113', result2[1])
def test_32bit_number_list_combo5(self):
# zero + zebra
list = [0, 0, 0, 0, 0, 0, 1]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 1 + 2), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(0, result[0])
self.assertEqual(1, result[6])
self.assertEqual(2 * (2 + 1 + 1 + 2), input._offset)
def test_32bit_number_list_combo5(self):
# zero + zebra
list = [0, 0, 0, 0, 0, 0, 1]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 1 + 2), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(0, result[0])
self.assertEqual(1, result[6])
self.assertEqual(2 * (2 + 1 + 1 + 2), input._offset)
def test_32bit_number_list_combo6(self):
# zebra + zero
list = [1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 12 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[14])
self.assertEqual(0, result[15])
self.assertEqual(0, result[23])
self.assertEqual(2 * (2 + 1 + 2 * 12 + 1), input._offset)
def test_load_dump_and_get(self):
dump = BinaryOutput()
self.wm.dump(dump)
self.wm.load(BinaryInput(dump.result()))
for i in range(self.wm.size()):
self.assertEqual(ord(self.test_src[i]), self.wm.get(i))
def test_32bit_number_list_combo2(self):
# blank + non-blank
list = [0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 1 + 2 * 17), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(0, result[0])
self.assertEqual(0, result[2])
self.assertEqual(1, result[3])
self.assertEqual(1, result[19])
self.assertEqual(2 * (2 + 1 + 1 + 2 * 17), input._offset)
def test_32bit_number_list_combo1(self):
# non-blank + blank
list = [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 17 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[15])
self.assertEqual(0, result[17])
self.assertEqual(0, result[19])
self.assertEqual(2 * (2 + 1 + 2 * 17 + 1), input._offset)
def test_32bit_number_list_combo3(self):
# non-blank + zebra
list = [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 16 + 1 + 1 + 2 * 3), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[9])
self.assertEqual(0, result[16])
self.assertEqual(1, result[18])
self.assertEqual(2 * (2 + 1 + 2 * 16 + 1 + 1 + 2 * 3), input._offset)
def test_32bit_number_list_combo4(self):
# zebra + non-block
list = [1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 11 + 1 + 2 * 16), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(0, result[14])
self.assertEqual(1, result[15])
self.assertEqual(2, result[30])
self.assertEqual(2 * (2 + 1 + 2 * 11 + 1 + 2 * 16), input._offset)
def test_string(self):
output1 = BinaryOutput()
output1.dump_string('hello world')
input1 = BinaryInput(output1.result())
self.assertEqual('hello world', input1.load_string())
# 7bit safe charactes will be compressed
self.assertTrue(len(output1.result()) / 2 <= len('hello world'))
output2 = BinaryOutput()
output2.dump_string('')
self.assertEqual(len('') + 1, len(output2.result()) / 2)
# 7bit unsafe charactes will not be compressed
output3 = BinaryOutput()
output3.dump_string(u'\u1111\u1111')
self.assertEqual(len(output3.result()) / 2, len(u'\u1111\u1111') + 1)
def test_32bit_number_list_zebra(self):
list = [1, 0, 1, 0, 1, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 * 3 + 2 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(1, result[0])
self.assertEqual(0, result[1])
self.assertEqual(1, result[2])
self.assertEqual(0, result[3])
self.assertEqual(1, result[4])
self.assertEqual(0, result[5])
self.assertEqual(2 * (2 * 3 + 2 + 1), input._offset)
def test_32bit_number_list_zebra(self):
list = [1, 0, 1, 0, 1, 0]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 * 3 + 2 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(6, len(result))
self.assertEqual(1, result[0])
self.assertEqual(0, result[1])
self.assertEqual(1, result[2])
self.assertEqual(0, result[3])
self.assertEqual(1, result[4])
self.assertEqual(0, result[5])
self.assertEqual(2 * (2 * 3 + 2 + 1), input._offset)
def test_load_dump_and_rank_less_than(self):
dump = BinaryOutput()
self.wm.dump(dump)
self.wm.load(BinaryInput(dump.result()))
for c in range(256):
for i in range(self.wm.size()):
self.assertEqual(self.td[c][i], self.wm.rank_less_than(i, c))
def test_string(self):
output1 = BinaryOutput()
output1.dump_string('hello world')
input1 = BinaryInput(output1.result())
self.assertEqual('hello world', input1.load_string())
# 7bit safe charactes will be compressed
self.assertTrue(len(output1.result()) / 2 <= len('hello world'))
output2 = BinaryOutput()
output2.dump_string('')
self.assertEqual(len('') + 1, len(output2.result()) / 2)
# 7bit unsafe charactes will not be compressed
output3 = BinaryOutput()
output3.dump_string(u'\u1111\u1111')
self.assertEqual(len(output3.result()) / 2, len(u'\u1111\u1111') + 1)
def test_dump_load_and_get_position(self):
dump = BinaryOutput()
self.fm.dump(dump)
fm = FMIndex()
fm.load(BinaryInput(dump.result()))
for i, expect in enumerate(self.pd):
self.assertEqual(expect, fm.get_position(i))
def test_load_dump_and_size_and_count(self):
dump = BinaryOutput()
self.wm.dump(dump)
self.wm.load(BinaryInput(dump.result()))
self.assertEqual(len(self.test_src), self.wm.size())
for c in range(256):
self.assertEqual(self.rd[c][self.wm.size()], self.wm.count(c))
def test_dump_load_and_get_substring(self):
dump = BinaryOutput()
self.fm.dump(dump)
fm = FMIndex()
fm.load(BinaryInput(dump.result()))
for i, expect in enumerate(self.sd):
actual = fm.get_substring(i, fm.size())
self.assertEqual(expect, actual)
def test_32bit_number(self):
output1 = BinaryOutput()
output1.dump_32bit_number(0)
input1 = BinaryInput(output1.result())
self.assertEqual(0, input1.load_32bit_number())
output2 = BinaryOutput()
output2.dump_32bit_number(4294967295)
input2 = BinaryInput(output2.result())
self.assertEqual(4294967295, input2.load_32bit_number())
output3 = BinaryOutput()
output3.dump_32bit_number(4294967296)
input3 = BinaryInput(output3.result())
self.assertNotEqual(4294967296, input3.load_32bit_number())
def test_16bit_number(self):
output1 = BinaryOutput()
output1.dump_16bit_number(0)
input1 = BinaryInput(output1.result())
self.assertEqual(0, input1.load_16bit_number())
output2 = BinaryOutput()
output2.dump_16bit_number(65535)
input2 = BinaryInput(output2.result())
self.assertEqual(65535, input2.load_16bit_number())
output3 = BinaryOutput()
output3.dump_16bit_number(65536)
input3 = BinaryInput(output2.result())
self.assertNotEqual(65536, input3.load_16bit_number())
def test_32bit_number_list_combo6(self):
# zebra + zero
list = [
1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0,
0, 0
]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 12 + 1), len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[14])
self.assertEqual(0, result[15])
self.assertEqual(0, result[23])
self.assertEqual(2 * (2 + 1 + 2 * 12 + 1), input._offset)
def test_32bit_number_list_combo3(self):
# non-blank + zebra
list = [
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0, 1,
0, 0, 0, 0
]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 16 + 1 + 1 + 2 * 3),
len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(1, result[9])
self.assertEqual(0, result[16])
self.assertEqual(1, result[18])
self.assertEqual(2 * (2 + 1 + 2 * 16 + 1 + 1 + 2 * 3), input._offset)
def test_32bit_number_list_combo4(self):
# zebra + non-block
list = [
1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 2
]
output = BinaryOutput()
output.dump_32bit_number_list(list)
self.assertEqual(2 * (2 + 1 + 2 * 11 + 1 + 2 * 16),
len(output.result()))
input = BinaryInput(output.result())
result = input.load_32bit_number_list()
self.assertEqual(len(list), len(result))
self.assertEqual(1, result[0])
self.assertEqual(0, result[14])
self.assertEqual(1, result[15])
self.assertEqual(2, result[30])
self.assertEqual(2 * (2 + 1 + 2 * 11 + 1 + 2 * 16), input._offset)
def test_dump_load_and_get_rows(self):
dump = BinaryOutput()
self.fm.dump(dump)
fm = FMIndex()
fm.load(BinaryInput(dump.result()))
for i in range(fm.size()):
for j in range(i + 1, fm.size()):
s = self.str[i:j]
self.fm.get_rows(s)
fm.get_rows(s)
self.assertEqual(self.rd[s], fm.get_rows(s))
def test_dump_load_and_get_substring_boundary(self):
dump = BinaryOutput()
self.fm.dump(dump)
fm = FMIndex()
fm.load(BinaryInput(dump.result()))
try:
fm.get_substring(fm.size(), 0)
except:
pass
else:
self.fail("fm.get_substring()")
def test_string_list(self):
output1 = BinaryOutput()
output1.dump_string_list(['hello', 'world'])
input1 = BinaryInput(output1.result())
result1 = input1.load_string_list()
self.assertEqual('hello', result1[0])
self.assertEqual('world', result1[1])
output2 = BinaryOutput()
output2.dump_string_list(['\u1112', '\u1113'])
input2 = BinaryInput(output2.result())
result2 = input2.load_string_list()
self.assertEqual('\u1112', result2[0])
self.assertEqual('\u1113', result2[1])
def test_16bit_number(self):
output1 = BinaryOutput()
output1.dump_16bit_number(0)
input1 = BinaryInput(output1.result())
self.assertEqual(0, input1.load_16bit_number())
output2 = BinaryOutput()
output2.dump_16bit_number(65535)
input2 = BinaryInput(output2.result())
self.assertEqual(65535, input2.load_16bit_number())
output3 = BinaryOutput()
output3.dump_16bit_number(65536)
input3 = BinaryInput(output2.result())
self.assertNotEqual(65536, input3.load_16bit_number())
def test_32bit_number(self):
output1 = BinaryOutput()
output1.dump_32bit_number(0)
input1 = BinaryInput(output1.result())
self.assertEqual(0, input1.load_32bit_number())
output2 = BinaryOutput()
output2.dump_32bit_number(4294967295)
input2 = BinaryInput(output2.result())
self.assertEqual(4294967295, input2.load_32bit_number())
output3 = BinaryOutput()
output3.dump_32bit_number(4294967296)
input3 = BinaryInput(output3.result())
self.assertNotEqual(4294967296, input3.load_32bit_number())
def test_dump_load_and_size(self):
dump = BinaryOutput()
self.fm.dump(dump)
self.fm.load(BinaryInput(dump.result()))
self.assertEqual(len(self.str), self.fm.size())
