def list_datasets(conn):
print "\nList Datasets:"
print "=" * 50
params = ParametersI()
params.exp(conn.getUser().getId())
datasets = conn.getObjects("Dataset", params=params)
for dataset in datasets:
print "+Dataset: %s(%s)" % (dataset.getName(), dataset.getId())
for image in dataset.listChildren():
print "|-Image: %s(%s)" % (image.getName(), image.getId())
def read_data(conn):
imageId = 9
datasetId = 2
plateId = -1
print "\nList Projects:"
print "=" * 50
my_expId = conn.getUser().getId()
for project in conn.listProjects(my_expId):
print_obj(project)
for dataset in project.listChildren():
print_obj(dataset, 2)
for image in dataset.listChildren():
print_obj(image, 4)
print "\nList Datasets:"
print "=" * 50
params = ParametersI()
params.exp(conn.getUser().getId())
datasets = conn.getObjects("Dataset", params=params)
for dataset in datasets:
print_obj(dataset)
print "\nDataset:%s" % datasetId
print "=" * 50
dataset = conn.getObject("Dataset", datasetId)
print "\nImages in Dataset:", dataset.getName()
for image in dataset.listChildren():
print_obj(image)
image = conn.getObject("Image", imageId)
print "\nImage:%s" % imageId
print "=" * 50
print image.getName(), image.getDescription()
#Retrieve information about an image
print "X:", image.getSizeX()
print "Y:", image.getSizeY()
print "Z:", image.getSizeZ()
print "C:", image.getSizeC()
print "T:", image.getSizeT()
#render the first timepoint, mid Z section
z = image.getSizeZ() / 2
t = 0
renderedImage = image.renderImage(z, t)
#renderedImage.show() #popup (use for debug only)
#renderedImage.save("test.jpg") #save in the currend folder
print "\nList Screens:"
print "=" * 50
for screen in conn.getObjects("Screen"):
print_obj(screen)
for plate in screenlistChildren():
print_obj(plate, 2)
plateId = plate.getId()
if plateId >= 0:
print "\nPlate:%s" % plateId
print "=" * 50
plate = conn.getObject("Plate", plateid)
print "\nNumber ob fields:", plate.getNumberOfFields()
print "\nGrid size:", plate.getGridSize()
print "\n Wells in Plate:", plate.getName()
for well in plate.listChildren():
index = well.countWellSample()
print " Well: ", well.row, well.column, " Fields:", index
for index in xrange(0, index):
print " Image: ", \
well.getImage(index).getName(), \
well.getImage(index).getId()
def get_images(conn):
params=ParametersI()
params.exp(conn.getUser().getId())
images = conn.getObjects('Image', params=params)
return images
def get_datasets(conn):
params = ParametersI()
params.exp(conn.getUser().getId())
datasets = conn.getObjects('Dataset', params=params)
return datasets
