def test_copy(self):
"""Test annotation copy """
m = MutationData()
m.createAnnotation("foo", "3", "blah_source", annotationDescription="testing", tags=["superblah"], number="A")
m.createCopyAnnotation(m.getAnnotation("foo"), "bar")
# Note that getAnnotation returns an instance of Annotation, not simply the value
self.assertEqual(m.getAnnotation("foo"), m.getAnnotation("bar"))
def test_copy(self):
"""Test annotation copy """
m = MutationData()
m.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing",
tags=["superblah"],
number="A")
m.createCopyAnnotation(m.getAnnotation("foo"), "bar")
# Note that getAnnotation returns an instance of Annotation, not simply the value
self.assertEqual(m.getAnnotation("foo"), m.getAnnotation("bar"))
def test_hash(self):
"""Test that hashing works for a mutation data"""
m = MutationData()
m.start = 1
m.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing",
tags=["superblah"],
number="A")
m.createCopyAnnotation(m.getAnnotation("foo"), "bar")
# Not unique
m2 = MutationData()
m2.start = 1
m2.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing",
tags=["superblah"],
number="A")
m2.createCopyAnnotation(m.getAnnotation("foo"), "bar")
m3 = MutationData()
m3.start = 1
m3.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing 2",
tags=["superblah"],
number="A")
m3.createCopyAnnotation(m.getAnnotation("foo"), "bar")
m4 = MutationData()
m4.start = 1
m4.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing 2",
tags=["superblah", "testy blah"],
number="A")
m4.createCopyAnnotation(m.getAnnotation("foo"), "bar")
m5 = MutationData()
m5.start = 10
m5.createAnnotation("foo",
"3",
"blah_source",
annotationDescription="testing 2",
tags=["superblah", "testy blah"],
number="A")
m5.createCopyAnnotation(m.getAnnotation("foo"), "bar")
result = set()
result.add(m)
result.add(m2)
result.add(m3)
result.add(m4)
result.add(m5)
self.assertEqual(len(result), 4)
