def test_pheno_assocs_compact():
assocs = search_associations_compact(subject=TWIST_ZFIN,
rows=1000,
object_category='phenotype')
assert len(assocs) == 1
a = assocs[0]
assert a['subject'] == TWIST_ZFIN
assert 'ZP:0007631' in a['objects']
def test_go_assocs_compact():
assocs = search_associations_compact(subject=TWIST_ZFIN,
object_category='function')
assert len(assocs) == 1
a = assocs[0]
assert a['subject'] == TWIST_ZFIN
objs = a['objects']
assert 'GO:0002040' in objs
# test reciprocal query
for obj in objs:
print("TEST FOR {}".format(obj))
rassocs = search_associations_compact(
object=obj,
##subject_category='gene', # this is sometimes gene_product, protein.. in GO
object_category='function',
subject_taxon=DANIO,
rows=-1)
for a in rassocs:
print(" QUERY FOR {} -> {}".format(obj, a))
m = [a for a in rassocs if a['subject'] == TWIST_ZFIN]
assert len(m) == 1