def test_go_rules_13():
a = ["PomBase", "SPBC11B10.09", "cdc2", "", "GO:0007275", "PMID:21873635", "IBA", "PANTHER:PTN000623979|TAIR:locus:2099478", "P", "Cyclin-dependent kinase 1", "UniProtKB:P04551|PTN000624043", "protein", "taxon:284812", "20170228", "GO_Central", "", ""]
assoc = gafparser.to_association(a).associations[0]
gaferences = gaference.load_gaferencer_inferences_from_file("tests/resources/test.inferences.json")
test_result = qc.GoRule13().test(assoc, assocparser.AssocParserConfig(annotation_inferences=gaferences))
assert test_result.result_type == qc.ResultType.ERROR
a = ["PomBase", "SPBC11B10.09", "cdc2", "", "GO:0007275", "PMID:21873635", "EXP", "PANTHER:PTN000623979|TAIR:locus:2099478", "P", "Cyclin-dependent kinase 1", "UniProtKB:P04551|PTN000624043", "protein", "taxon:284812", "20170228", "GO_Central", "", ""]
assoc = gafparser.to_association(a).associations[0]
gaferences = gaference.load_gaferencer_inferences_from_file("tests/resources/test.inferences.json")
test_result = qc.GoRule13().test(assoc, assocparser.AssocParserConfig(annotation_inferences=gaferences))
assert test_result.result_type == qc.ResultType.WARNING
a = ["PomBase", "SPBC11B10.09", "cdc2", "NOT", "GO:0007275", "PMID:21873635", "EXP", "PANTHER:PTN000623979|TAIR:locus:2099478", "P", "Cyclin-dependent kinase 1", "UniProtKB:P04551|PTN000624043", "protein", "taxon:284812", "20170228", "GO_Central", "", ""]
assoc = gafparser.to_association(a).associations[0]
gaferences = gaference.load_gaferencer_inferences_from_file("tests/resources/test.inferences.json")
test_result = qc.GoRule13().test(assoc, assocparser.AssocParserConfig(annotation_inferences=gaferences))
assert test_result.result_type == qc.ResultType.PASS
a = ["AspGD", "ASPL0000059928", "AN0127", "", "GO:0032258", "AspGD_REF:ASPL0000000005", "IEA", "SGD:S000001917", "P", "", "AN0127|ANID_00127|ANIA_00127", "gene_product", "taxon:227321", "20200201", "AspGD", "", ""]
assoc = gafparser.to_association(a).associations[0]
gaferences = gaference.load_gaferencer_inferences_from_file("tests/resources/test.inferences.json")
test_result = qc.GoRule13().test(assoc, assocparser.AssocParserConfig(annotation_inferences=gaferences))
assert test_result.result_type == qc.ResultType.ERROR
def test_go_rules_13():
a = [
"PomBase", "SPBC11B10.09", "cdc2", "", "GO:0007275", "PMID:21873635",
"IBA", "PANTHER:PTN000623979|TAIR:locus:2099478", "P",
"Cyclin-dependent kinase 1", "UniProtKB:P04551|PTN000624043",
"protein", "taxon:284812", "20170228", "GO_Central", "", ""
]
assoc = gafparser.to_association(a).associations[0]
gaferences = gaference.load_gaferencer_inferences_from_file(
"tests/resources/test.inferences.json")
test_result = qc.GoRule13().test(
assoc, assocparser.AssocParserConfig(annotation_inferences=gaferences))
assert test_result.result_type == qc.ResultType.WARNING