def export_to_mtg(lstring):
from openalea.mtg.io import axialtree2mtg
# Name of the modules to export
tree_parameters = ['treename', 'estimation', 'loading', 'variety', 'seed']
for m in lstring:
if m.name == 'Tree':
tree_parameters = list(m[0].parameter_names())
break
params_to_export = [
tree_parameters,
[
'burst_date', 'cycle', 'mtgid', 'nature', 'mixed_inflo',
'final_length_gu', 'length', 'radius', 'final_length_leaves',
'nb_internodes'
],
[
'burst_date', 'bloom_date', 'fullbloom_date', 'cycle',
'final_length', 'length', 'fruiting', 'nb_axes', 'nb_fruits',
'fruits_weight', 'fruits_maturity_date', 'leaffruit_ratio'
],
[
'inflo_fullbloom_date', 'cycle', 'growth', 'maturity_date',
'growth_stage_date', 'initial_weight', 'weight'
]
]
# Convert lstring into mtg
mtg = axialtree2mtg(lstring,
scale=dict(list(zip(modules_to_export, scales))),
scene=None,
parameters=dict(
list(zip(modules_to_export, params_to_export))))
assert not mtg is None
return mtg
def export_to_mtg_light(lstring, cycle):
from openalea.mtg.io import axialtree2mtg
lmodules_to_export = modules_to_export + ['InflorescenceBud']
lscales = scales + [2]
params_to_export = [['treename', 'variety'], ['burst_date', 'cycle'],
['fullbloom_date', 'bloom_date', 'cycle', 'nb_fruits'],
['inflo_fullbloom_date', 'cycle'],
['fullbloom_date', 'bloom_date', 'cycle', 'nb_fruits']]
params_to_export = [['p'] + p for p in params_to_export]
parameters = dict(list(zip(lmodules_to_export, params_to_export)))
# Convert lstring into mtg
mtg = axialtree2mtg(lstring,
scale=dict(list(zip(lmodules_to_export, lscales))),
scene=None,
parameters=parameters)
labels = mtg.property('label')
toupdate = [
(v, 'Inflorescence') for v, n in list(labels.items())
if n == 'InflorescenceBud' and mtg.property('cycle')[v] == cycle
]
labels.update(toupdate)
toremove = [v for v, n in list(labels.items()) if n == 'InflorescenceBud']
for vid in toremove:
mtg.remove_vertex(vid)
for pname in parameters['InflorescenceBud']:
if vid in mtg.property(pname):
del mtg.property(pname)[vid]
return mtg
def str2mtg(s):
#s = s.replace('N', 'F')
tree = AxialTree(s)
l = Lsystem()
l.addInterpretationRule('N --> F', 0)
geom_tree = l.homomorphism(tree)
scene = l.sceneInterpretation(geom_tree)
scale = dict(list(zip(('P', 'A', 'N', 'L', 'F'), (1, 2, 3, 3, 3))))
mtg = axialtree2mtg(tree, scale, scene)
return tree, mtg, scene
def str2mtg(s):
#s = s.replace('N', 'F')
tree = AxialTree(s)
l = Lsystem()
l.addInterpretationRule('N --> F', 0)
geom_tree = l.homomorphism(tree)
scene = l.sceneInterpretation(geom_tree)
scale = dict(zip(('P','A','N', 'L', 'F'),(1,2,3,3,3)))
mtg = axialtree2mtg(tree, scale, scene)
return tree, mtg, scene
def to_mtg(model):
scales = {}
scales['P'] = 1
scales['A'] = 1
scales['I'] = 1
scales['B'] = 1
params = {}
params['P'] = ['age']
params['A'] = ['age']
params['I'] = ['age']
g = axialtree2mtg(m.axialtree, scales, None, params)
return g
def to_mtg(model):
scales = {}
scales['P'] = 1
scales['A'] =1
scales['I'] = 1
scales['B'] = 1
params ={}
params['P'] = ['age']
params['A'] = ['age']
params['I'] = ['age']
g = axialtree2mtg(m.axialtree, scales, None, params)
return g