def __getListMetaInfo(self, inferenceElement):
""" Get field metadata information for inferences that are of list type
TODO: Right now we assume list inferences are associated with the input field
metadata
"""
fieldMetaInfo = []
inferenceLabel = InferenceElement.getLabel(inferenceElement)
for inputFieldMeta in self.__inputFieldsMeta:
if InferenceElement.getInputElement(inferenceElement):
outputFieldMeta = FieldMetaInfo(
name=inputFieldMeta.name + ".actual",
type=inputFieldMeta.type,
special=inputFieldMeta.special
)
predictionField = FieldMetaInfo(
name=inputFieldMeta.name + "." + inferenceLabel,
type=inputFieldMeta.type,
special=inputFieldMeta.special
)
fieldMetaInfo.append(outputFieldMeta)
fieldMetaInfo.append(predictionField)
return fieldMetaInfo
def __getDictMetaInfo(self, inferenceElement, inferenceDict):
"""Get field metadate information for inferences that are of dict type"""
fieldMetaInfo = []
inferenceLabel = InferenceElement.getLabel(inferenceElement)
if InferenceElement.getInputElement(inferenceElement):
fieldMetaInfo.append(FieldMetaInfo(name=inferenceLabel+".actual",
type=FieldMetaType.string,
special = ''))
keys = sorted(inferenceDict.keys())
for key in keys:
fieldMetaInfo.append(FieldMetaInfo(name=inferenceLabel+"."+str(key),
type=FieldMetaType.string,
special=''))
return fieldMetaInfo
def __openDatafile(self, modelResult):
"""Open the data file and write the header row"""
# Write reset bit
resetFieldMeta = FieldMetaInfo(name="reset",
type=FieldMetaType.integer,
special=FieldMetaSpecial.reset)
self.__outputFieldsMeta.append(resetFieldMeta)
# -----------------------------------------------------------------------
# Write each of the raw inputs that go into the encoders
rawInput = modelResult.rawInput
rawFields = rawInput.keys()
rawFields.sort()
for field in rawFields:
if field.startswith('_') or field == 'reset':
continue
value = rawInput[field]
meta = FieldMetaInfo(name=field,
type=FieldMetaType.string,
special=FieldMetaSpecial.none)
self.__outputFieldsMeta.append(meta)
self._rawInputNames.append(field)
# -----------------------------------------------------------------------
# Handle each of the inference elements
for inferenceElement, value in modelResult.inferences.iteritems():
inferenceLabel = InferenceElement.getLabel(inferenceElement)
# TODO: Right now we assume list inferences are associated with
# The input field metadata
if type(value) in (list, tuple):
# Append input and prediction field meta-info
self.__outputFieldsMeta.extend(
self.__getListMetaInfo(inferenceElement))
elif isinstance(value, dict):
self.__outputFieldsMeta.extend(
self.__getDictMetaInfo(inferenceElement, value))
else:
if InferenceElement.getInputElement(inferenceElement):
self.__outputFieldsMeta.append(
FieldMetaInfo(name=inferenceLabel + ".actual",
type=FieldMetaType.string,
special=''))
self.__outputFieldsMeta.append(
FieldMetaInfo(name=inferenceLabel,
type=FieldMetaType.string,
special=''))
if self.__metricNames:
for metricName in self.__metricNames:
metricField = FieldMetaInfo(name=metricName,
type=FieldMetaType.float,
special=FieldMetaSpecial.none)
self.__outputFieldsMeta.append(metricField)
# Create the inference directory for our experiment
inferenceDir = _FileUtils.createExperimentInferenceDir(
self.__experimentDir)
# Consctruct the prediction dataset file path
filename = (self.__label + "." +
opf_utils.InferenceType.getLabel(self.__inferenceType) +
".predictionLog.csv")
self.__datasetPath = os.path.join(inferenceDir, filename)
# Create the output dataset
print "OPENING OUTPUT FOR PREDICTION WRITER AT: %r" % self.__datasetPath
print "Prediction field-meta: %r" % (
[tuple(i) for i in self.__outputFieldsMeta], )
self.__dataset = FileRecordStream(streamID=self.__datasetPath,
write=True,
fields=self.__outputFieldsMeta)
# Copy data from checkpoint cache
if self.__checkpointCache is not None:
self.__checkpointCache.seek(0)
reader = csv.reader(self.__checkpointCache, dialect='excel')
# Skip header row
try:
header = reader.next()
except StopIteration:
print "Empty record checkpoint initializer for %r" % (
self.__datasetPath, )
else:
assert tuple(self.__dataset.getFieldNames()) == tuple(header), \
"dataset.getFieldNames(): %r; predictionCheckpointFieldNames: %r" % (
tuple(self.__dataset.getFieldNames()), tuple(header))
# Copy the rows from checkpoint
numRowsCopied = 0
while True:
try:
row = reader.next()
except StopIteration:
break
#print "DEBUG: restoring row from checkpoint: %r" % (row,)
self.__dataset.appendRecord(row)
numRowsCopied += 1
self.__dataset.flush()
print "Restored %d rows from checkpoint for %r" % (
numRowsCopied, self.__datasetPath)
# Dispose of our checkpoint cache
self.__checkpointCache.close()
self.__checkpointCache = None
return
def __openDatafile(self, modelResult):
"""Open the data file and write the header row"""
# Write reset bit
resetFieldMeta = FieldMetaInfo(
name="reset",
type=FieldMetaType.integer,
special = FieldMetaSpecial.reset)
self.__outputFieldsMeta.append(resetFieldMeta)
# -----------------------------------------------------------------------
# Write each of the raw inputs that go into the encoders
rawInput = modelResult.rawInput
rawFields = rawInput.keys()
rawFields.sort()
for field in rawFields:
if field.startswith('_') or field == 'reset':
continue
value = rawInput[field]
meta = FieldMetaInfo(name=field, type=FieldMetaType.string,
special=FieldMetaSpecial.none)
self.__outputFieldsMeta.append(meta)
self._rawInputNames.append(field)
# -----------------------------------------------------------------------
# Handle each of the inference elements
for inferenceElement, value in modelResult.inferences.iteritems():
inferenceLabel = InferenceElement.getLabel(inferenceElement)
# TODO: Right now we assume list inferences are associated with
# The input field metadata
if type(value) in (list, tuple):
# Append input and prediction field meta-info
self.__outputFieldsMeta.extend(self.__getListMetaInfo(inferenceElement))
elif isinstance(value, dict):
self.__outputFieldsMeta.extend(self.__getDictMetaInfo(inferenceElement,
value))
else:
if InferenceElement.getInputElement(inferenceElement):
self.__outputFieldsMeta.append(FieldMetaInfo(name=inferenceLabel+".actual",
type=FieldMetaType.string, special = ''))
self.__outputFieldsMeta.append(FieldMetaInfo(name=inferenceLabel,
type=FieldMetaType.string, special = ''))
if self.__metricNames:
for metricName in self.__metricNames:
metricField = FieldMetaInfo(
name = metricName,
type = FieldMetaType.float,
special = FieldMetaSpecial.none)
self.__outputFieldsMeta.append(metricField)
# Create the inference directory for our experiment
inferenceDir = _FileUtils.createExperimentInferenceDir(self.__experimentDir)
# Consctruct the prediction dataset file path
filename = (self.__label + "." +
opf_utils.InferenceType.getLabel(self.__inferenceType) +
".predictionLog.csv")
self.__datasetPath = os.path.join(inferenceDir, filename)
# Create the output dataset
print "OPENING OUTPUT FOR PREDICTION WRITER AT: %r" % self.__datasetPath
print "Prediction field-meta: %r" % ([tuple(i) for i in self.__outputFieldsMeta],)
self.__dataset = FileRecordStream(streamID=self.__datasetPath, write=True,
fields=self.__outputFieldsMeta)
# Copy data from checkpoint cache
if self.__checkpointCache is not None:
self.__checkpointCache.seek(0)
reader = csv.reader(self.__checkpointCache, dialect='excel')
# Skip header row
try:
header = reader.next()
except StopIteration:
print "Empty record checkpoint initializer for %r" % (self.__datasetPath,)
else:
assert tuple(self.__dataset.getFieldNames()) == tuple(header), \
"dataset.getFieldNames(): %r; predictionCheckpointFieldNames: %r" % (
tuple(self.__dataset.getFieldNames()), tuple(header))
# Copy the rows from checkpoint
numRowsCopied = 0
while True:
try:
row = reader.next()
except StopIteration:
break
#print "DEBUG: restoring row from checkpoint: %r" % (row,)
self.__dataset.appendRecord(row)
numRowsCopied += 1
self.__dataset.flush()
print "Restored %d rows from checkpoint for %r" % (
numRowsCopied, self.__datasetPath)
# Dispose of our checkpoint cache
self.__checkpointCache.close()
self.__checkpointCache = None
return