def import_ints(cyto_ppis_fname):
cyto_ppis = [p[:4] for p in ut.load_lol(cyto_ppis_fname)[1:]]
ppis_dupes = [(id1.split('_')[1],id2.split('_')[1],prob,
1 if corum in set(['gold','train']) else 0)
for id1,id2,prob,corum in cyto_ppis]
cxppis = pd.pd_lol(pd.PairDict(ppis_dupes))
return cxppis
def combine_pres_ppis(resa, resb):
res = ut.struct_copy(resa)
res.name = 'combined: %s, %s' % (resa.name, resb.name)
res.ppis = pd.pd_lol(pd.pd_combine_ppis(pd.PairDict(resa.ppis),
pd.PairDict(resb.ppis), combine_or))
res.ppis.sort(key=lambda x: x[2], reverse=True)
return res
def combine_ppis(a,b):
ppis = pd.pd_lol(pd.pd_combine_ppis(pd.PairDict(a), pd.PairDict(b),
combine_or))
return ppis