def compress_file(self, src_path, dest_path, compression):
if compression is None:
shutil.copyfile(src_path, dest_path)
return
if compression == "gzip":
f = gzip.open(dest_path, "w")
elif compression == "bz2":
f = bz2.BZ2File(dest_path, "w")
elif compression == "zip":
with zipfile.ZipFile(dest_path, "w", compression=zipfile.ZIP_DEFLATED) as f:
f.write(src_path, os.path.basename(src_path))
elif compression == "xz":
f = _get_lzma_file(lzma)(dest_path, "w")
else:
msg = "Unrecognized compression type: {}".format(compression)
raise ValueError(msg)
if compression != "zip":
with open(src_path, "rb") as fh, f:
f.write(fh.read())
def get_handle(
path_or_buf,
mode: str,
encoding=None,
compression: CompressionOptions = None,
memory_map: bool = False,
is_text: bool = True,
errors=None,
):
"""
Get file handle for given path/buffer and mode.
Parameters
----------
path_or_buf : str or file handle
File path or object.
mode : str
Mode to open path_or_buf with.
encoding : str or None
Encoding to use.
compression : str or dict, default None
If string, specifies compression mode. If dict, value at key 'method'
specifies compression mode. Compression mode must be one of {'infer',
'gzip', 'bz2', 'zip', 'xz', None}. If compression mode is 'infer'
and `filepath_or_buffer` is path-like, then detect compression from
the following extensions: '.gz', '.bz2', '.zip', or '.xz' (otherwise
no compression). If dict and compression mode is one of
{'zip', 'gzip', 'bz2'}, or inferred as one of the above,
other entries passed as additional compression options.
.. versionchanged:: 1.0.0
May now be a dict with key 'method' as compression mode
and other keys as compression options if compression
mode is 'zip'.
.. versionchanged:: 1.1.0
Passing compression options as keys in dict is now
supported for compression modes 'gzip' and 'bz2' as well as 'zip'.
memory_map : boolean, default False
See parsers._parser_params for more information.
is_text : boolean, default True
Whether the type of the content passed to the file/buffer is string or
bytes. This is not the same as `"b" not in mode`. If a string content is
passed to a binary file/buffer, a wrapper is inserted.
errors : str, default 'strict'
Specifies how encoding and decoding errors are to be handled.
See the errors argument for :func:`open` for a full list
of options.
.. versionadded:: 1.1.0
Returns
-------
f : file-like
A file-like object.
handles : list of file-like objects
A list of file-like object that were opened in this function.
"""
need_text_wrapping: Tuple[Type["IOBase"], ...]
try:
from s3fs import S3File
need_text_wrapping = (BufferedIOBase, RawIOBase, S3File)
except ImportError:
need_text_wrapping = (BufferedIOBase, RawIOBase)
# fsspec is an optional dependency. If it is available, add its file-object
# class to the list of classes that need text wrapping. If fsspec is too old and is
# needed, get_filepath_or_buffer would already have thrown an exception.
try:
from fsspec.spec import AbstractFileSystem
need_text_wrapping = (*need_text_wrapping, AbstractFileSystem)
except ImportError:
pass
handles: List[Union[IO, _MMapWrapper]] = list()
f = path_or_buf
# Convert pathlib.Path/py.path.local or string
path_or_buf = stringify_path(path_or_buf)
is_path = isinstance(path_or_buf, str)
compression, compression_args = get_compression_method(compression)
if is_path:
compression = infer_compression(path_or_buf, compression)
if compression:
# GZ Compression
if compression == "gzip":
if is_path:
f = gzip.GzipFile(filename=path_or_buf,
mode=mode,
**compression_args)
else:
f = gzip.GzipFile(fileobj=path_or_buf,
mode=mode,
**compression_args)
# BZ Compression
elif compression == "bz2":
f = bz2.BZ2File(path_or_buf, mode=mode, **compression_args)
# ZIP Compression
elif compression == "zip":
zf = _BytesZipFile(path_or_buf, mode, **compression_args)
# Ensure the container is closed as well.
handles.append(zf)
if zf.mode == "w":
f = zf
elif zf.mode == "r":
zip_names = zf.namelist()
if len(zip_names) == 1:
f = zf.open(zip_names.pop())
elif len(zip_names) == 0:
raise ValueError(
f"Zero files found in ZIP file {path_or_buf}")
else:
raise ValueError("Multiple files found in ZIP file. "
f"Only one file per ZIP: {zip_names}")
# XZ Compression
elif compression == "xz":
f = _get_lzma_file(lzma)(path_or_buf, mode)
# Unrecognized Compression
else:
msg = f"Unrecognized compression type: {compression}"
raise ValueError(msg)
handles.append(f)
elif is_path:
# Check whether the filename is to be opened in binary mode.
# Binary mode does not support 'encoding' and 'newline'.
is_binary_mode = "b" in mode
if encoding and not is_binary_mode:
# Encoding
f = open(path_or_buf,
mode,
encoding=encoding,
errors=errors,
newline="")
elif is_text and not is_binary_mode:
# No explicit encoding
f = open(path_or_buf, mode, errors="replace", newline="")
else:
# Binary mode
f = open(path_or_buf, mode)
handles.append(f)
# Convert BytesIO or file objects passed with an encoding
if is_text and (compression or isinstance(f, need_text_wrapping)):
from io import TextIOWrapper
g = TextIOWrapper(f, encoding=encoding, errors=errors, newline="")
if not isinstance(f, (BufferedIOBase, RawIOBase)):
handles.append(g)
f = g
if memory_map and hasattr(f, "fileno"):
try:
wrapped = _MMapWrapper(f)
f.close()
handles.remove(f)
handles.append(wrapped)
f = wrapped
except Exception:
# we catch any errors that may have occurred
# because that is consistent with the lower-level
# functionality of the C engine (pd.read_csv), so
# leave the file handler as is then
pass
return f, handles
def _get_handle(
path_or_buf,
mode: str,
encoding=None,
compression: Optional[Union[str, Mapping[str, Any]]] = None,
memory_map: bool = False,
is_text: bool = True,
):
"""
Get file handle for given path/buffer and mode.
Parameters
----------
path_or_buf : str or file handle
File path or object.
mode : str
Mode to open path_or_buf with.
encoding : str or None
Encoding to use.
compression : str or dict, default None
If string, specifies compression mode. If dict, value at key 'method'
specifies compression mode. Compression mode must be one of {'infer',
'gzip', 'bz2', 'zip', 'xz', None}. If compression mode is 'infer'
and `filepath_or_buffer` is path-like, then detect compression from
the following extensions: '.gz', '.bz2', '.zip', or '.xz' (otherwise
no compression). If dict and compression mode is 'zip' or inferred as
'zip', other entries passed as additional compression options.
.. versionchanged:: 1.0.0
May now be a dict with key 'method' as compression mode
and other keys as compression options if compression
mode is 'zip'.
memory_map : boolean, default False
See parsers._parser_params for more information.
is_text : boolean, default True
whether file/buffer is in text format (csv, json, etc.), or in binary
mode (pickle, etc.).
Returns
-------
f : file-like
A file-like object.
handles : list of file-like objects
A list of file-like object that were opened in this function.
"""
try:
from s3fs import S3File
need_text_wrapping = (BufferedIOBase, S3File)
except ImportError:
need_text_wrapping = BufferedIOBase # type: ignore
handles = list() # type: List[IO]
f = path_or_buf
# Convert pathlib.Path/py.path.local or string
path_or_buf = _stringify_path(path_or_buf)
is_path = isinstance(path_or_buf, str)
compression, compression_args = _get_compression_method(compression)
if is_path:
compression = _infer_compression(path_or_buf, compression)
if compression:
# GZ Compression
if compression == "gzip":
if is_path:
f = gzip.open(path_or_buf, mode)
else:
f = gzip.GzipFile(fileobj=path_or_buf)
# BZ Compression
elif compression == "bz2":
if is_path:
f = bz2.BZ2File(path_or_buf, mode)
else:
f = bz2.BZ2File(path_or_buf)
# ZIP Compression
elif compression == "zip":
zf = BytesZipFile(path_or_buf, mode, **compression_args)
# Ensure the container is closed as well.
handles.append(zf)
if zf.mode == "w":
f = zf
elif zf.mode == "r":
zip_names = zf.namelist()
if len(zip_names) == 1:
f = zf.open(zip_names.pop())
elif len(zip_names) == 0:
raise ValueError(
"Zero files found in ZIP file {}".format(path_or_buf))
else:
raise ValueError(
"Multiple files found in ZIP file."
" Only one file per ZIP: {}".format(zip_names))
# XZ Compression
elif compression == "xz":
f = _get_lzma_file(lzma)(path_or_buf, mode)
# Unrecognized Compression
else:
msg = "Unrecognized compression type: {}".format(compression)
raise ValueError(msg)
handles.append(f)
elif is_path:
if encoding:
# Encoding
f = open(path_or_buf, mode, encoding=encoding, newline="")
elif is_text:
# No explicit encoding
f = open(path_or_buf, mode, errors="replace", newline="")
else:
# Binary mode
f = open(path_or_buf, mode)
handles.append(f)
# Convert BytesIO or file objects passed with an encoding
if is_text and (compression or isinstance(f, need_text_wrapping)):
from io import TextIOWrapper
g = TextIOWrapper(f, encoding=encoding, newline="")
if not isinstance(f, BufferedIOBase):
handles.append(g)
f = g
if memory_map and hasattr(f, "fileno"):
try:
wrapped = MMapWrapper(f)
f.close()
f = wrapped
except Exception:
# we catch any errors that may have occurred
# because that is consistent with the lower-level
# functionality of the C engine (pd.read_csv), so
# leave the file handler as is then
pass
return f, handles
def _get_handle(path_or_buf,
mode,
encoding=None,
compression=None,
memory_map=False,
is_text=True):
"""
Get file handle for given path/buffer and mode.
Parameters
----------
path_or_buf :
a path (str) or buffer
mode : str
mode to open path_or_buf with
encoding : str or None
compression : {'infer', 'gzip', 'bz2', 'zip', 'xz', None}, default None
If 'infer' and `filepath_or_buffer` is path-like, then detect
compression from the following extensions: '.gz', '.bz2', '.zip',
or '.xz' (otherwise no compression).
memory_map : boolean, default False
See parsers._parser_params for more information.
is_text : boolean, default True
whether file/buffer is in text format (csv, json, etc.), or in binary
mode (pickle, etc.)
Returns
-------
f : file-like
A file-like object
handles : list of file-like objects
A list of file-like object that were opened in this function.
"""
try:
from s3fs import S3File
need_text_wrapping = (BytesIO, S3File)
except ImportError:
need_text_wrapping = (BytesIO, )
handles = list()
f = path_or_buf
# Convert pathlib.Path/py.path.local or string
path_or_buf = _stringify_path(path_or_buf)
is_path = isinstance(path_or_buf, str)
if is_path:
compression = _infer_compression(path_or_buf, compression)
if compression:
# GZ Compression
if compression == "gzip":
if is_path:
f = gzip.open(path_or_buf, mode)
else:
f = gzip.GzipFile(fileobj=path_or_buf)
# BZ Compression
elif compression == "bz2":
if is_path:
f = bz2.BZ2File(path_or_buf, mode)
else:
f = bz2.BZ2File(path_or_buf)
# ZIP Compression
elif compression == "zip":
zf = BytesZipFile(path_or_buf, mode)
# Ensure the container is closed as well.
handles.append(zf)
if zf.mode == "w":
f = zf
elif zf.mode == "r":
zip_names = zf.namelist()
if len(zip_names) == 1:
f = zf.open(zip_names.pop())
elif len(zip_names) == 0:
raise ValueError(
"Zero files found in ZIP file {}".format(path_or_buf))
else:
raise ValueError(
"Multiple files found in ZIP file."
" Only one file per ZIP: {}".format(zip_names))
# XZ Compression
elif compression == "xz":
f = _get_lzma_file(lzma)(path_or_buf, mode)
# Unrecognized Compression
else:
msg = "Unrecognized compression type: {}".format(compression)
raise ValueError(msg)
handles.append(f)
elif is_path:
if encoding:
# Encoding
f = open(path_or_buf, mode, encoding=encoding, newline="")
elif is_text:
# No explicit encoding
f = open(path_or_buf, mode, errors="replace", newline="")
else:
# Binary mode
f = open(path_or_buf, mode)
handles.append(f)
# Convert BytesIO or file objects passed with an encoding
if is_text and (compression or isinstance(f, need_text_wrapping)):
from io import TextIOWrapper
f = TextIOWrapper(f, encoding=encoding, newline="")
handles.append(f)
if memory_map and hasattr(f, "fileno"):
try:
g = MMapWrapper(f)
f.close()
f = g
except Exception:
# we catch any errors that may have occurred
# because that is consistent with the lower-level
# functionality of the C engine (pd.read_csv), so
# leave the file handler as is then
pass
return f, handles