def wrap_in_middleware( app, global_conf, **local_conf ):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update( local_conf )
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# If we're using remote_user authentication, add middleware that
# protects Galaxy from improperly configured authentication in the
# upstream server
if asbool(conf.get( 'use_remote_user', False )):
from galaxy.webapps.tool_shed.framework.middleware.remoteuser import RemoteUser
app = RemoteUser( app, maildomain = conf.get( 'remote_user_maildomain', None ),
display_servers = util.listify( conf.get( 'display_servers', '' ) ),
admin_users = conf.get( 'admin_users', '' ).split( ',' ),
remote_user_secret_header = conf.get('remote_user_secret', None) )
log.debug( "Enabling 'remote user' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ):
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require( "WebError" )
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
# Not in interactive debug mode, just use the regular error middleware
import galaxy.web.framework.middleware.error
app = galaxy.web.framework.middleware.error.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# If sentry logging is enabled, log here before propogating up to
# the error middleware
# TODO sentry config is duplicated between tool_shed/galaxy, refactor this.
sentry_dsn = conf.get( 'sentry_dsn', None )
if sentry_dsn:
from galaxy.web.framework.middleware.sentry import Sentry
log.debug( "Enabling 'sentry' middleware" )
app = Sentry( app, sentry_dsn )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
app = hg.Hg( app, conf )
log.debug( "Enabling hg middleware" )
return app
def wrap_in_middleware( app, global_conf, **local_conf ):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update( local_conf )
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# Then load the Hg middleware.
app = hg.Hg( app, conf )
log.debug( "Enabling 'hg' middleware" )
# If we're using remote_user authentication, add middleware that
# protects Galaxy from improperly configured authentication in the
# upstream server
if asbool(conf.get( 'use_remote_user', False )):
from galaxy.webapps.tool_shed.framework.middleware.remoteuser import RemoteUser
app = RemoteUser( app, maildomain=conf.get( 'remote_user_maildomain', None ),
display_servers=util.listify( conf.get( 'display_servers', '' ) ),
admin_users=conf.get( 'admin_users', '' ).split( ',' ),
remote_user_secret_header=conf.get('remote_user_secret', None) )
log.debug( "Enabling 'remote user' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ) and not process_is_uwsgi:
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
if debug and asbool( conf.get( 'use_interactive', False ) ) and process_is_uwsgi:
log.error("Interactive debugging middleware is enabled in your configuration "
"but this is a uwsgi process. Refusing to wrap in interactive error middleware.")
# Not in interactive debug mode, just use the regular error middleware
import galaxy.web.framework.middleware.error
app = galaxy.web.framework.middleware.error.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# If sentry logging is enabled, log here before propogating up to
# the error middleware
# TODO sentry config is duplicated between tool_shed/galaxy, refactor this.
sentry_dsn = conf.get( 'sentry_dsn', None )
if sentry_dsn:
from galaxy.web.framework.middleware.sentry import Sentry
log.debug( "Enabling 'sentry' middleware" )
app = Sentry( app, sentry_dsn )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance. The print debug middleware needs to be loaded last,
# since there is a quirk in its behavior that breaks some (but not
# all) subsequent middlewares.
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
return app
def make_middleware(app, global_conf, **local_conf):
"""
Based on the configuration wrap `app` in a set of common and useful
middleware.
"""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool(conf.get('debug', False))
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware(app, conf)
log.debug("Enabling 'httpexceptions' middleware")
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware(app, conf)
log.debug("Enabling 'recursive' middleware")
# Session middleware puts a session factory into the environment
if asbool(conf.get('use_session', True)):
store = flup_session.MemorySessionStore()
app = flup_session.SessionMiddleware(store, app)
log.debug("Enabling 'flup session' middleware")
# Beaker session middleware
if asbool(conf.get('use_beaker_session', False)):
pkg_resources.require("Beaker")
import beaker.session
app = beaker.session.SessionMiddleware(app, conf)
log.debug("Enabling 'beaker session' middleware")
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool(conf.get('use_lint', True)):
from paste import lint
app = lint.make_middleware(app, conf)
log.debug("Enabling 'lint' middleware")
# Middleware to run the python profiler on each request
if asbool(conf.get('use_profile', False)):
from paste.debug import profile
app = profile.ProfileMiddleware(app, conf)
log.debug("Enabling 'profile' middleware")
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
if asbool(conf.get('use_interactive', False)):
from paste import evalexception
app = evalexception.EvalException(app, conf)
log.debug("Enabling 'eval exceptions' middleware")
else:
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware(app, conf)
log.debug("Enabling 'error' middleware")
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool(conf.get('use_printdebug', True)):
from paste.debug import prints
app = prints.PrintDebugMiddleware(app, conf)
log.debug("Enabling 'print debug' middleware")
else:
# Not in debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware(app, conf)
log.debug("Enabling 'error' middleware")
# Transaction logging (apache access.log style)
if asbool(conf.get('use_translogger', True)):
from paste.translogger import TransLogger
app = TransLogger(app)
log.debug("Enabling 'trans logger' middleware")
# Config middleware just stores the paste config along with the request,
# not sure we need this but useful
from paste.deploy.config import ConfigMiddleware
app = ConfigMiddleware(app, conf)
log.debug("Enabling 'config' middleware")
# X-Forwarded-Host handling
app = XForwardedHostMiddleware(app)
log.debug("Enabling 'x-forwarded-host' middleware")
return app
def wrap_in_middleware( app, global_conf, **local_conf ):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ) and not process_is_uwsgi:
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
if debug and asbool( conf.get( 'use_interactive', False ) ) and process_is_uwsgi:
log.error("Interactive debugging middleware is enabled in your configuration "
"but this is a uwsgi process. Refusing to wrap in interactive error middleware.")
# Not in interactive debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
return app
def wrap_in_middleware(app, global_conf, **local_conf):
"""
Based on the configuration wrap `app` in a set of common and useful
middleware.
"""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool(conf.get('debug', False))
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware(app, conf)
log.debug("Enabling 'httpexceptions' middleware")
# If we're using remote_user authentication, add middleware that
# protects Galaxy from improperly configured authentication in the
# upstream server
if asbool(conf.get('use_remote_user', False)):
from galaxy.web.framework.middleware.remoteuser import RemoteUser
app = RemoteUser(
app,
maildomain=conf.get('remote_user_maildomain', None),
display_servers=util.listify(conf.get('display_servers', '')),
admin_users=conf.get('admin_users', '').split(','),
remote_user_header=conf.get('remote_user_header',
'HTTP_REMOTE_USER'),
remote_user_secret_header=conf.get('remote_user_secret', None))
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware(app, conf)
log.debug("Enabling 'recursive' middleware")
# If sentry logging is enabled, log here before propogating up to
# the error middleware
sentry_dsn = conf.get('sentry_dsn', None)
if sentry_dsn:
from galaxy.web.framework.middleware.sentry import Sentry
app = Sentry(app, sentry_dsn)
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool(conf.get('use_lint', False)):
from paste import lint
app = lint.make_middleware(app, conf)
log.debug("Enabling 'lint' middleware")
# Middleware to run the python profiler on each request
if asbool(conf.get('use_profile', False)):
from paste.debug import profile
app = profile.ProfileMiddleware(app, conf)
log.debug("Enabling 'profile' middleware")
if debug and asbool(conf.get('use_interactive', False)):
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require("WebError")
from weberror import evalexception
app = evalexception.EvalException(
app, conf, templating_formatters=build_template_error_formatters())
log.debug("Enabling 'eval exceptions' middleware")
else:
# Not in interactive debug mode, just use the regular error middleware
import galaxy.web.framework.middleware.error
app = galaxy.web.framework.middleware.error.ErrorMiddleware(app, conf)
log.debug("Enabling 'error' middleware")
# Transaction logging (apache access.log style)
if asbool(conf.get('use_translogger', True)):
from galaxy.web.framework.middleware.translogger import TransLogger
app = TransLogger(app)
log.debug("Enabling 'trans logger' middleware")
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware(app)
log.debug("Enabling 'x-forwarded-host' middleware")
# Request ID middleware
from galaxy.web.framework.middleware.request_id import RequestIDMiddleware
app = RequestIDMiddleware(app)
log.debug("Enabling 'Request ID' middleware")
return app
def wrap_in_middleware( app, global_conf, **local_conf ):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ) and not process_is_uwsgi:
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require( "WebError" )
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
if debug and asbool( conf.get( 'use_interactive', False ) ) and process_is_uwsgi:
log.error("Interactive debugging middleware is enabled in your configuration "
"but this is a uwsgi process. Refusing to wrap in interactive error middleware.")
# Not in interactive debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
return app
def wrap_in_middleware( app, global_conf, **local_conf ):
"""
Based on the configuration wrap `app` in a set of common and useful
middleware.
"""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# If we're using remote_user authentication, add middleware that
# protects Galaxy from improperly configured authentication in the
# upstream server
if asbool(conf.get( 'use_remote_user', False )):
from galaxy.web.framework.middleware.remoteuser import RemoteUser
app = RemoteUser( app, maildomain=conf.get( 'remote_user_maildomain', None ),
display_servers=util.listify( conf.get( 'display_servers', '' ) ),
admin_users=conf.get( 'admin_users', '' ).split( ',' ),
remote_user_header=conf.get( 'remote_user_header', 'HTTP_REMOTE_USER' ),
remote_user_secret_header=conf.get('remote_user_secret', None),
normalize_remote_user_email=conf.get('normalize_remote_user_email', False))
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# If sentry logging is enabled, log here before propogating up to
# the error middleware
sentry_dsn = conf.get( 'sentry_dsn', None )
if sentry_dsn:
from galaxy.web.framework.middleware.sentry import Sentry
app = Sentry( app, sentry_dsn )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', False ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
from paste.debug import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ) and not process_is_uwsgi:
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
if debug and asbool( conf.get( 'use_interactive', False ) ) and process_is_uwsgi:
log.error("Interactive debugging middleware is enabled in your configuration "
"but this is a uwsgi process. Refusing to wrap in interactive error middleware.")
# Not in interactive debug mode, just use the regular error middleware
import galaxy.web.framework.middleware.error
app = galaxy.web.framework.middleware.error.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from galaxy.web.framework.middleware.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# Statsd request timing and profiling
statsd_host = conf.get('statsd_host', None)
if statsd_host:
from galaxy.web.framework.middleware.statsd import StatsdMiddleware
app = StatsdMiddleware( app, statsd_host, conf.get('statsd_port'))
log.debug( "Enabling 'statsd' middleware" )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
# Request ID middleware
from galaxy.web.framework.middleware.request_id import RequestIDMiddleware
app = RequestIDMiddleware( app )
log.debug( "Enabling 'Request ID' middleware" )
return app
def wrap_in_middleware(app, global_conf, **local_conf):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool(conf.get('debug', False))
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware(app, conf)
log.debug("Enabling 'httpexceptions' middleware")
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware(app, conf)
log.debug("Enabling 'recursive' middleware")
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool(conf.get('use_lint', True)):
from paste import lint
app = lint.make_middleware(app, conf)
log.debug("Enabling 'lint' middleware")
# Middleware to run the python profiler on each request
if asbool(conf.get('use_profile', False)):
import profile
app = profile.ProfileMiddleware(app, conf)
log.debug("Enabling 'profile' middleware")
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool(conf.get('use_printdebug', True)):
from paste.debug import prints
app = prints.PrintDebugMiddleware(app, conf)
log.debug("Enabling 'print debug' middleware")
if debug and asbool(conf.get('use_interactive', False)):
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require("WebError")
from weberror import evalexception
app = evalexception.EvalException(app, conf,
templating_formatters=build_template_error_formatters())
log.debug("Enabling 'eval exceptions' middleware")
else:
# Not in interactive debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware(app, conf, show_exceptions_in_wsgi_errors=True, error_log=log)
log.debug("Enabling 'error' middleware")
# Transaction logging (apache access.log style)
if asbool(conf.get('use_translogger', True)):
from paste.translogger import TransLogger
app = TransLogger(app)
log.debug("Enabling 'trans logger' middleware")
# Config middleware just stores the paste config along with the request,
# not sure we need this but useful
from paste.deploy.config import ConfigMiddleware
app = ConfigMiddleware(app, conf)
log.debug("Enabling 'config' middleware")
# X-Forwarded-Host handling
from cm.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware(app)
log.debug("Enabling 'x-forwarded-host' middleware")
# Paste digest authentication
ud = misc.load_yaml_file(paths.USER_DATA_FILE)
if ud.get('password', ''):
from paste.auth.basic import AuthBasicHandler
app = AuthBasicHandler(app, 'CM Administration', cm_authfunc)
return app
def make_middleware( app, global_conf, **local_conf ):
"""
Based on the configuration wrap `app` in a set of common and useful
middleware.
"""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# Session middleware puts a session factory into the environment
if asbool( conf.get( 'use_session', True ) ):
store = flup_session.MemorySessionStore()
app = flup_session.SessionMiddleware( store, app )
log.debug( "Enabling 'flup session' middleware" )
# Beaker session middleware
if asbool( conf.get( 'use_beaker_session', False ) ):
pkg_resources.require( "Beaker" )
import beaker.session
app = beaker.session.SessionMiddleware( app, conf )
log.debug( "Enabling 'beaker session' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
from paste.debug import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
if asbool( conf.get( 'use_interactive', False ) ):
from paste import evalexception
app = evalexception.EvalException( app, conf )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
else:
# Not in debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# Config middleware just stores the paste config along with the request,
# not sure we need this but useful
from paste.deploy.config import ConfigMiddleware
app = ConfigMiddleware( app, conf )
log.debug( "Enabling 'config' middleware" )
# X-Forwarded-Host handling
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
return app
def wrap_in_middleware( app, global_conf, **local_conf ):
"""
Based on the configuration wrap `app` in a set of common and useful
middleware.
"""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool( conf.get( 'debug', False ) )
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware( app, conf )
log.debug( "Enabling 'httpexceptions' middleware" )
# If we're using remote_user authentication, add middleware that
# protects Galaxy from improperly configured authentication in the
# upstream server
if asbool(conf.get( 'use_remote_user', False )):
from galaxy.web.framework.middleware.remoteuser import RemoteUser
app = RemoteUser( app, maildomain=conf.get( 'remote_user_maildomain', None ), ucsc_display_sites=conf.get( 'ucsc_display_sites', [] ) )
log.debug( "Enabling 'remote user' middleware" )
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware( app, conf )
log.debug( "Enabling 'recursive' middleware" )
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool( conf.get( 'use_lint', True ) ):
from paste import lint
app = lint.make_middleware( app, conf )
log.debug( "Enabling 'lint' middleware" )
# Middleware to run the python profiler on each request
if asbool( conf.get( 'use_profile', False ) ):
import profile
app = profile.ProfileMiddleware( app, conf )
log.debug( "Enabling 'profile' middleware" )
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool( conf.get( 'use_printdebug', True ) ):
from paste.debug import prints
app = prints.PrintDebugMiddleware( app, conf )
log.debug( "Enabling 'print debug' middleware" )
if debug and asbool( conf.get( 'use_interactive', False ) ):
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require( "WebError" )
from weberror import evalexception
app = evalexception.EvalException( app, conf,
templating_formatters=build_template_error_formatters() )
log.debug( "Enabling 'eval exceptions' middleware" )
else:
# Not in interactive debug mode, just use the regular error middleware
if sys.version_info[:2] >= ( 2, 6 ):
warnings.filterwarnings( 'ignore', '.*', DeprecationWarning, '.*serial_number_generator', 11, True )
from paste.exceptions import errormiddleware
warnings.filters.pop()
else:
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware( app, conf )
log.debug( "Enabling 'error' middleware" )
# Transaction logging (apache access.log style)
if asbool( conf.get( 'use_translogger', True ) ):
from paste.translogger import TransLogger
app = TransLogger( app )
log.debug( "Enabling 'trans logger' middleware" )
# Config middleware just stores the paste config along with the request,
# not sure we need this but useful
from paste.deploy.config import ConfigMiddleware
app = ConfigMiddleware( app, conf )
log.debug( "Enabling 'config' middleware" )
# X-Forwarded-Host handling
from galaxy.web.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware( app )
log.debug( "Enabling 'x-forwarded-host' middleware" )
return app
def wrap_in_middleware(app, global_conf, **local_conf):
"""Based on the configuration wrap `app` in a set of common and useful middleware."""
# Merge the global and local configurations
conf = global_conf.copy()
conf.update(local_conf)
debug = asbool(conf.get('debug', False))
# First put into place httpexceptions, which must be most closely
# wrapped around the application (it can interact poorly with
# other middleware):
app = httpexceptions.make_middleware(app, conf)
log.debug("Enabling 'httpexceptions' middleware")
# The recursive middleware allows for including requests in other
# requests or forwarding of requests, all on the server side.
if asbool(conf.get('use_recursive', True)):
from paste import recursive
app = recursive.RecursiveMiddleware(app, conf)
log.debug("Enabling 'recursive' middleware")
# Various debug middleware that can only be turned on if the debug
# flag is set, either because they are insecure or greatly hurt
# performance
if debug:
# Middleware to check for WSGI compliance
if asbool(conf.get('use_lint', True)):
from paste import lint
app = lint.make_middleware(app, conf)
log.debug("Enabling 'lint' middleware")
# Middleware to run the python profiler on each request
if asbool(conf.get('use_profile', False)):
import profile
app = profile.ProfileMiddleware(app, conf)
log.debug("Enabling 'profile' middleware")
# Middleware that intercepts print statements and shows them on the
# returned page
if asbool(conf.get('use_printdebug', True)):
from paste.debug import prints
app = prints.PrintDebugMiddleware(app, conf)
log.debug("Enabling 'print debug' middleware")
if debug and asbool(conf.get('use_interactive', False)):
# Interactive exception debugging, scary dangerous if publicly
# accessible, if not enabled we'll use the regular error printing
# middleware.
pkg_resources.require("WebError")
from weberror import evalexception
app = evalexception.EvalException(
app, conf, templating_formatters=build_template_error_formatters())
log.debug("Enabling 'eval exceptions' middleware")
else:
# Not in interactive debug mode, just use the regular error middleware
from paste.exceptions import errormiddleware
app = errormiddleware.ErrorMiddleware(
app, conf, show_exceptions_in_wsgi_errors=True, error_log=log)
log.debug("Enabling 'error' middleware")
# Transaction logging (apache access.log style)
if asbool(conf.get('use_translogger', True)):
from paste.translogger import TransLogger
app = TransLogger(app)
log.debug("Enabling 'trans logger' middleware")
# Config middleware just stores the paste config along with the request,
# not sure we need this but useful
from paste.deploy.config import ConfigMiddleware
app = ConfigMiddleware(app, conf)
log.debug("Enabling 'config' middleware")
# X-Forwarded-Host handling
from cm.framework.middleware.xforwardedhost import XForwardedHostMiddleware
app = XForwardedHostMiddleware(app)
log.debug("Enabling 'x-forwarded-host' middleware")
# Paste digest authentication
ud = misc.load_yaml_file(paths.USER_DATA_FILE)
if ud.get('password', ''):
from paste.auth.basic import AuthBasicHandler
app = AuthBasicHandler(app, 'CM Administration', cm_authfunc)
return app