def extractFiles(indir="/Users/Pratik/Documents/Pratik/Work/practice/py-data-analysis", out="/Users/Pratik/Documents/Pratik/Work/practice/py-data-analysis/extracted"):
os.chdir(indir) # change directory
archives = glob.glob("*.gz") # get all archive files that end in .gz
if not os.path.exists(out): # if folder doesn't exist make it
os.mkdirs(out)
files = os.listdir("extracted") # get list of all the files currently in the directory
for archive in archives: # loop through archives and extract files
if archive[:-3] not in files: # if file is already in folder don't extract (cut out exten)
patoolib.extract_archive(archive, outdir=out)
def get_starling_data():
if len(glob("../../data/processed/starling/delineations/*.img")) > 1:
print("Data already download")
return
print("Downloading data")
dl_output = "../../data/raw/starling/" # data download
img_output = "../../data/processed/starling/" # processed save spot
data_url = "http://uahost.uantwerpen.be/bioimaginglab/starling.zip"
# ensure directories
ensure_dir(dl_output)
ensure_dir(img_output)
ensure_dir(img_output + "delineations/")
zip_loc = dl_output + "starling.zip"
# download data
tqdm_download(data_url, zip_loc)
# extract the data
patoolib.extract_archive(zip_loc, outdir=dl_output)
# move the data to the correct location
for img_file in np.concatenate(
[glob(dl_output + "ATLAS_starling/*." + ed) for ed in ["img", "hdr"]]):
shutil.copy(img_file, img_output + os.path.basename(img_file))
for img_file in np.concatenate([
glob(dl_output + "ATLAS_starling/delineations/*." + ed)
for ed in ["img", "hdr", "txt"]
]):
shutil.copy(img_file,
img_output + "delineations/" + os.path.basename(img_file))
def _install_anime4kcpp(self):
""" Install Anime4KCPP
"""
print('\nInstalling Anime4KCPP')
import patoolib
import requests
# get latest release of Anime4KCPP via Github API
# at the time of writing this portion, Anime4KCPP doesn't yet have a stable release
# therefore releases/latest won't work
latest_release = requests.get(
'https://api.github.com/repos/TianZerL/Anime4KCPP/releases/latest'
).json()
for a in latest_release['assets']:
if re.search(r'Anime4KCPP_CLI-.*-Win64-msvc\.7z',
a['browser_download_url']):
anime4kcpp_7z = download(a['browser_download_url'],
tempfile.gettempdir())
self.trash.append(anime4kcpp_7z)
# if running in PyInstaller, add sys._MEIPASS\7z to path
# this directory contains 7za.exe and its DLL files
with contextlib.suppress(AttributeError):
os.environ['PATH'] += f';{sys._MEIPASS}\\7z'
# (LOCALAPPDATA / 'video2x' / 'anime4kcpp').mkdir(parents=True, exist_ok=True)
# pyunpack.Archive(anime4kcpp_7z).extractall(LOCALAPPDATA / 'video2x' / 'anime4kcpp')
if (LOCALAPPDATA / 'video2x' / 'anime4kcpp').exists():
shutil.rmtree(LOCALAPPDATA / 'video2x' / 'anime4kcpp')
patoolib.extract_archive(str(anime4kcpp_7z),
outdir=str(LOCALAPPDATA / 'video2x' /
'anime4kcpp'))
def extract_archive_data(archive_data, archive_name, folder):
"""Extract and save data from compressed folder from config map.
Args:
archive_data (str): Base64 encoded jsonnet folder (archive).
archive_name (str): Archive name (needed for extensions).
folder (str): Folder that will be created and archive extracted to.
Returns:
None
"""
try:
if not os.path.exists(folder):
os.mkdir(folder)
except OSError as e:
log.error(f"Error when creating folder {folder}, error: {e}")
return
try:
with open(archive_name, "wb") as f:
f.write(base64.b64decode(archive_data))
except (binascii.Error, IOError) as e:
log.error(f"Error when decoding {archive_name}, error: {e}")
try:
patoolib.extract_archive(archive_name, outdir=folder, verbosity=-1)
log.info(f"File {archive_name} extracted to {folder}")
except patoolib.util.PatoolError as e:
log.error(f"Error when extracting {archive_name}, error: {e}")
remove_file("./", archive_name)
def cbzgenerator(namefile, origen):
logfile = origen + '/cbrconverter.log'
parents, filename = os.path.split(namefile)
temporal = parents + '/temporal'
try:
os.mkdir(temporal)
except OSError:
print("Creation of the directory %s failed" % temporal)
print(namefile)
try:
patoolib.extract_archive(namefile, outdir=temporal)
except:
f = open(logfile, "a")
f.write("Error descomprimiendo: " + namefile + '\n')
f.close()
try:
shutil.rmtree(temporal)
except OSError:
print('Error while deleting directory')
os.rename(namefile, namefile + ".extraido")
archivos = glob.glob(temporal + '/**/*.*', recursive=True)
archivos.sort()
filename2, file_extension = os.path.splitext(filename)
cbz = parents + '/' + filename2 + '.cbz.new'
zipobje = ZipFile(cbz, 'w')
for archivos2 in archivos:
datemodified(archivos2)
ruta, nombrearchivo = os.path.split(archivos2)
zipobje.write(archivos2, basename(nombrearchivo))
zipobje.close()
try:
shutil.rmtree(temporal)
except:
print('Error while deleting directory')
def run():
# Get data directory from environment
datadir = os.environ.get('NATURA_DATA_DIRECTORY', '')
if not datadir:
print('Datadir not found, please specify NATURA_DATA_DIRECTORY env var.')
return
# Get geographic files
url = const.NATURA2000_SITES_SOURCE
filepath = os.path.join(datadir, os.path.basename(url))
print('Downloading file', url, filepath)
response = requests.get(url, stream=True)
with open(filepath, "wb") as handle:
for data in response.iter_content(chunk_size=1024):
if data:
handle.write(data)
print('Unpacking file', filepath)
patoolib.extract_archive(filepath, outdir=datadir)
# Get tabular data
url = const.NATURA2000_TABLE_SOURCE
filepath = os.path.join(datadir, 'natura2000_tabular.zip')
print('Downloading file', url, filepath)
response = requests.get(url, stream=True)
with open(filepath, "wb") as handle:
for data in response.iter_content(chunk_size=1024):
if data:
handle.write(data)
print('Unpacking file', filepath)
patoolib.extract_archive(filepath, outdir=datadir)
def ftpDownloader(Id,
startID,
endID,
url="<url here>",
user="******",
passwd="<password here>"):
ftp = FTP(url)
ftp.login(user, passwd)
if not os.path.exists(pathname):
os.makedirs(pathname)
print(ftp.nlst())
ftp.cwd("<ftp working durectory here>")
os.chdir(pathname)
for array in range(startID, endID + 1):
#Enter full path below, including start and stop IDs
fullpath = '<insert ftp path here>' % (array, Id, array)
filename = os.path.basename(fullpath)
try:
with open(filename, 'wb') as file:
ftp.retrbinary('RETR %s' % fullpath, file.write)
print("%s downloaded" % filename)
if filename[-3:] == ".gz" or filename[
-4:] == ".zip" or filename[-4:] == ".tar":
patoolib.extract_archive(filename, outdir="unpack")
except error_perm:
print("%s is not available" % filename)
os.remove(filename)
ftp.close()
def main():
top = tkinter.Tk()
top.withdraw()
archivepath = ''
if (len(sys.argv) == 1):
archivepath = askopenfilename(title="Selecteaza arhiva")
else:
archivepath = sys.argv[1]
folderpath = os.path.dirname(archivepath)
filename = '.'.join(os.path.basename(archivepath).split('.')[:-1])
destinationPath = folderpath
if (len(sys.argv) == 3):
destinationPath = sys.argv[2]
else:
destinationPath = askdirectory(
title="Selecteaza directorul unde se vor dezarhiva fisierele.",
initialdir=destinationPath)
destFilesPath = os.path.join(destinationPath,
DEST_FOLDER_PREFIX + filename)
if (not os.path.exists(destFilesPath)):
os.makedirs(destFilesPath)
patoolib.extract_archive(archivepath, outdir=destFilesPath)
exit()
def extract_archive(from_path, to_path=None, remove_finished=False):
if to_path is None:
to_path = os.path.dirname(from_path)
if _is_tar(from_path):
with tarfile.open(from_path, 'r') as tar:
tar.extractall(path=to_path)
elif _is_targz(from_path):
with tarfile.open(from_path, 'r:gz') as tar:
tar.extractall(path=to_path)
elif _is_tarxz(from_path) and PY3:
# .tar.xz archive only supported in Python 3.x
with tarfile.open(from_path, 'r:xz') as tar:
tar.extractall(path=to_path)
elif _is_gzip(from_path):
to_path = os.path.join(
to_path,
os.path.splitext(os.path.basename(from_path))[0])
with open(to_path, "wb") as out_f, gzip.GzipFile(from_path) as zip_f:
out_f.write(zip_f.read())
elif _is_zip(from_path):
with zipfile.ZipFile(from_path, 'r') as z:
z.extractall(to_path)
elif _is_rar(from_path):
patoolib.extract_archive(from_path, outdir=to_path)
else:
raise ValueError("Extraction of {} not supported".format(from_path))
if remove_finished:
os.remove(from_path)
def unpack(input_file, output_folder):
"""
:param input_file: file to unpack
:param output_folder: folder to save file unpacked
:return: Message of unpacked or no file detected
"""
print(input_file)
if os.path.isdir(input_file):
return False
with open(input_file, "rb") as file:
info = fleep.get(file.read(128))
extensions_supported = {'rar', '7z', 'dmg', 'gz', 'iso', 'tar.z', 'zip'}
print(info.extension)
if not info.extension:
result = False
elif set(info.extension) & extensions_supported:
print(set(info.extension) & extensions_supported)
print('---> File recognized, unpacking <---')
try:
patoolib.extract_archive(input_file, outdir=output_folder)
# probably a false positive
except PatoolError:
return False
result = True
else:
result = False
return result
def decompress_file(file, dir, directories='strip'):
fullcmd = None
for ptr, cmd in DECOMPRESSORS.iteritems():
if re.search(ptr, file):
fullcmd = cmd % locals()
break
# if fullcmd is not None:
# lgr.debug("Extracting file: %s" % fullcmd)
# status, output = getstatusoutput(fullcmd) # getstatusoutput is deprecated. Use cmd.Runner.run() instead.
# if status:
# lgr.debug("Failed to extract: status %d output %s" % (status, output))
# else:
#lgr.debug("Have no clue how to extract %s -- using patool" % file)
verbosity = -1 # silent by default
ef_level = lgr.getEffectiveLevel()
if ef_level and lgr.getEffectiveLevel() <= logging.DEBUG:
verbosity = 1
#elif lgr.getEffectiveLevel() <= logging.INFO:
# verbosity = 0
patoolib.extract_archive(file, outdir=dir, verbosity=verbosity)
if directories == 'strip':
_, dirs, files = os.walk(dir).next()
if not len(files) and len(dirs) == 1:
# move all the content under dirs[0] up 1 level
subdir, subdirs_, files_ = os.walk(join(dir, dirs[0])).next()
for f in subdirs_ + files_:
os.rename(join(subdir, f), join(dir, f))
else:
raise NotImplementedError("Not supported %s" % directories)
def extra_file(file_path):
file_extra_dir = file_path[0:file_path.rfind(os.path.sep)]
print("file_extra_dir: ", file_extra_dir)
if not os.path.exists(file_extra_dir):
os.mkdir(file_extra_dir)
patoolib.extract_archive(file_path, outdir=file_extra_dir)
return file_extra_dir
def writing_to_BD():
url = 'http://programtv.ru/xmltv.xml.gz'
response = requests.get(url)
xml_gz = open(
os.path.dirname(os.path.realpath(__file__)) + '\\xmltv.xml.gz', 'wb')
xml_gz.write(response.content)
xml_gz.close()
os.chdir(os.path.dirname(os.path.realpath(__file__)))
patoolib.extract_archive(
os.path.dirname(os.path.realpath(__file__)) + '\\xmltv.xml.gz',
outdir=os.path.dirname(os.path.realpath(__file__)))
with open("xmltv.xml", encoding='utf-8') as fobj:
xml = fobj.read().encode('utf-8')
root = etree.fromstring(xml)
for elem in root:
if elem.tag == "channel":
num_of_channels = session.query(BD.Channel.name).filter(
BD.Channel.id_channel == elem.get('id')).count()
if num_of_channels == 0:
table_channel = BD.Channel(id_channel=elem.get('id'),
name=elem[1].text)
session.add(table_channel)
#session.commit()
if elem.tag == "programme":
num_of_id_telecasts = session.query(BD.Telecast.id).filter(
BD.Telecast.name == elem[0].text).count()
if num_of_id_telecasts == 0:
table_telecast = BD.Telecast(name=elem[0].text)
session.add(table_telecast)
#session.commit()
num_of_id_genres = session.query(
BD.Genre.id).filter(BD.Genre.name == elem[1].text)
if num_of_id_genres == 0:
table_genre = BD.Genre(name=elem[1].text)
session.add(table_genre)
#session.commit()
start = parser.parse(elem.get('start'))
start = start.strftime("%Y-%m-%d %H:%M:%S")
end = parser.parse(elem.get('stop'))
end = end.strftime("%Y-%m-%d %H:%M:%S")
id_telecast = session.query(BD.Telecast.id).filter(
BD.Telecast.name == elem[0].text).first()
table_tvprogram = BD.TVprogram(channel=elem.get('channel'),
telecast=id_telecast,
start_time=start,
end_time=end)
session.add(table_tvprogram)
#session.commit()
session.commit()
def extract_rar_data(source, target, extract_src = False):
if extract_src:
for file in os.listdir(source):
if file.endswith(".rar"):
patoolib.extract_archive(source+file, outdir = target)
allrar = [y for x in os.walk(target) for y in glob(os.path.join(x[0], '*.rar'))]
for file in allrar:
patoolib.extract_archive(file, outdir = target)
def uncompressFile(self,from_location,to_location):
if from_location.endswith(".zip"):
zfile = zipfile.ZipFile(from_location)
zfile.extractall(to_location)
print("uncompressing:" + from_location)
elif from_location.endswith(".rar"):
patoolib.extract_archive(from_location, outdir=to_location)
def extract_to_dir(archive_path, to_dir):
"""Extract the content of an archive in to_dir.
archive_path (string): path of the archive to extract.
to_dir (string): destination directory.
"""
patoolib.extract_archive(archive_path, outdir=to_dir, interactive=False)
def _extract(self):
try:
if not os.path.isdir(self.e_path):
os.mkdir(self.e_path)
patoolib.extract_archive(self.a_path, outdir=self.e_path)
print("FILES EXTRACTED")
except Exception as e:
print(f"Failed: {str(e)}")
def uncompressFile(from_location, to_location):
if from_location.endswith(".zip"):
zfile = zipfile.ZipFile(from_location)
zfile.extractall(to_location)
print("uncompressing:" + from_location)
elif from_location.endswith(".rar"):
patoolib.extract_archive(from_location, outdir=to_location)
def extract_to_dir(archive_path, to_dir):
"""Extract the content of an archive in to_dir.
archive_path (string): path of the archive to extract.
to_dir (string): destination directory.
"""
patoolib.extract_archive(archive_path, outdir=to_dir)
def unpack_photo_archive(self, rar_url):
archive_dir = Path(self.storage, r'archive')
try:
os.mkdir(archive_dir)
except FileExistsError:
self.clean_directory(archive_dir)
patoolib.extract_archive(rar_url, outdir=archive_dir)
return archive_dir
def convert_rar_to_txt(download_path):
# 解压内容放到同名的目录
output_dir = download_path[:download_path.rfind('.')]
if not os.path.exists(output_dir):
os.mkdir(output_dir)
# 如果文件夹下为空 解压
if len(os.listdir(output_dir)) < 1:
patoolib.extract_archive(download_path, outdir=output_dir)
# 检查是不是多了一层目录
if len(os.listdir(output_dir)) == 1:
for extra in os.listdir(output_dir):
if extra.endswith('.DS_Store'):
continue
else:
# 多余的一层目录 把下面的文件考出来 然后目录删掉
tobe_del_dir = os.path.join(output_dir, extra)
if os.path.isdir(tobe_del_dir):
for pdf_file in os.listdir(tobe_del_dir):
if not pdf_file.endswith('.DS_Store'):
# 拷贝到父目录
shutil.move(os.path.join(tobe_del_dir, pdf_file),
os.path.join(output_dir, pdf_file))
# 删除
os.removedirs(tobe_del_dir)
# 筛选
logging.info(output_dir)
for pdf_file in os.listdir(output_dir):
if os.path.isfile(os.path.join(output_dir, pdf_file)):
if pdf_file.endswith('.DS_Store'):
continue
elif pdf_file.endswith('.tif'):
# 图片合并转化
merge_dir_pic_to_txt(output_dir)
# 图片转化完成后 就break
break
elif pdf_file.endswith('.jpg') or pdf_file.endswith('.png'):
# 图片合并转化
merge_dir_pic_to_txt(output_dir)
# 图片转化完成后 就break
break
elif pdf_file.endswith('.doc') or pdf_file.endswith('.docx'):
if need_to_save(pdf_file):
doc_path = os.path.join(output_dir, pdf_file)
convert_doc_to_txt(doc_path)
elif pdf_file.endswith('.pdf'):
if need_to_save(pdf_file):
pdf_path = os.path.join(output_dir, pdf_file)
convert_pdf_to_txt(pdf_path)
elif pdf_file.endswith('.txt'):
continue
else:
logging.info('解压出来的文件不知道怎么处理 %s/%s' % (output_dir, pdf_file))
logging.info('')
return
def _analyze_compressed_file(parent, node, path, nesting_level):
m_type = mime.from_file(path)
size = os.path.getsize(path)
m = md5()
s = sha1()
with open(path, "rb") as f:
for chunk in iter(lambda: f.read(4096), b""):
m.update(chunk)
s.update(chunk)
str_md5 = m.hexdigest()
str_sha1 = s.hexdigest()
str_fuzzy = ssdeep.hash_from_file(path)
node['filename'] = os.path.basename(path)
node['mime_type'] = m_type
node['size'] = size
node['md5'] = str_md5
node['sha1'] = str_sha1
node['fuzzy'] = str_fuzzy
node['nesting_level'] = nesting_level + 1
str_fuzzy = ssdeep.hash_from_file(path)
node['fuzzy'] = str_fuzzy
if parent is None:
node['parent_hash'] = None
else:
node['parent_hash'] = parent.get('sha1')
node['compressed_children'] = []
# If this is a compressed file, analyze it recursively. This means we need to create a new directory, uncompress
# files there and calculate hashes. Then, delete the extracted files when done.
# zip, x-tar, x-7z-compressed, x-rar, vnd.ms-cab-compressed, gzip, x-bzip2, x-7z-compressed
tmpdir = tempfile.mkdtemp()
try:
# Brute force approach: we don't even check the mime file. We try to unpack evey archive.
# Extract all the files
patoolib.extract_archive(path, outdir=tmpdir)
# Analyze each file
files = [
os.path.join(tmpdir, f) for f in os.listdir(tmpdir)
if os.path.isfile(os.path.join(tmpdir, f))
]
for f in files:
child = dict()
_analyze_compressed_file(parent=node,
node=child,
path=f,
nesting_level=nesting_level + 1)
node['compressed_children'].append(child)
except:
pass
finally:
# Remove the temporary file directory
shutil.rmtree(tmpdir)
def extractFiles(indir = "weather-data", out="extracted"):
os.chdir(indir)
archives = glob.glob("*.gz")
if not os.path.exists(out):
os.makedirs(out)
files = os.listdir("extracted")
for archive in archives:
if archive[:-3] not in files:
patoolib.extract_archive(archive, outdir = out)
def download_extract_all(urls, dir_save, extract_data=True, verbose=True):
"""Download urls + extract files to disk.
Download + extract all url files to disk. If clean_cache is
True, it removes the download files.
Parameters
----------
urls : list/tuple
List/tuple of URL paths.
dir_save : str
Directory to store the downloaded data.
extract_data : bool, optional
Extracts/unpacks the data files (if true).
verbose : bool, optional
Display messages on screen if set to True.
Raises
------
Exception
If it is an invalid url type.
"""
# Check if urls is a str
if isinstance(urls, str):
urls = [urls]
# check if the save directory exists
if not os.path.exists(dir_save):
os.makedirs(dir_save)
# download + extract data and remove temporary files
for i, url in enumerate(urls):
if verbose:
print('\nDownload url ({}/{}): {}'.format(i + 1, len(urls), url))
url, md5hash, filename, extract_dir, method = parse_url(url)
save_dir = os.path.join(dir_save, extract_dir)
filename = os.path.join(save_dir, filename)
if not os.path.exists(save_dir):
os.makedirs(save_dir)
if os.path.exists(filename):
print('File already exists, skip downloading this url.')
else:
status, err = download_url(url, filename, method, verbose)
if not status:
raise Exception(err)
if md5hash:
md5_checksum(filename, md5hash)
if extract_data:
patoolib.extract_archive(filename,
outdir=save_dir,
verbosity=verbose)
def decompress_to_temp(self, file):
try:
patoolib.extract_archive(archive=os.path.join(file), verbosity=0, outdir=self.TEMPDIR)
except Exception as e:
print('Decompression failed. Exception Thrown: ' + str(e))
self.logfile.log_error('Decompression failed. Exception Thrown: ' + file + str(e))
return False
else:
return True
def unpack(self):
"""Extract archive's content to a temporary directory.
return (string): the path of the temporary directory.
"""
self.temp_dir = tempfile.mkdtemp(dir=config.temp_dir)
patoolib.extract_archive(self.path, outdir=self.temp_dir)
return self.temp_dir
def extractFiles(indir='/home/oleh/PYDATA', out='/home/oleh/PYDATA/Extracted'):
os.chdir(indir)
archives = glob.glob("*.gz")
if not os.path.exists(out):
os.makedirs(out)
files = os.listdir("Extracted")
for archive in archives:
if archive[:-3] not in files:
patoolib.extract_archive(archive, outdir=out)
def rar_cvrt():
test_folder = os.path.join(PARENT_FOLDER, 'testrar')
for file_name in os.listdir(test_folder):
file_path = os.path.join(test_folder, file_name)
if file_name.endswith('.rar'):
extract_dir = file_path[:file_path.rfind('.')]
if not os.path.exists(extract_dir):
os.mkdir(extract_dir)
patoolib.extract_archive(file_path, outdir=extract_dir)
def unpack(self):
"""Extract archive's content to a temporary directory.
return (string): the path of the temporary directory.
"""
self.temp_dir = tempfile.mkdtemp(dir=config.temp_dir)
patoolib.extract_archive(self.path, outdir=self.temp_dir)
return self.temp_dir
def ExtractRarFile(self, RarFileName, destPath):
"""Rar file extraction procedure
Args:
self: The reserved object 'self'
RarFileName: Extractable file path + name
destPath: Destination path for extracted files
"""
patoolib.extract_archive(RarFileName, outdir=destPath)
def extract(self, src, dest):
#make destination directory first, or else patool complains
#also change replay
try:
os.mkdir(dest)
except OSError:
pass
extract_archive(src, outdir=dest)
def extractFiles(indir="/Users/Pratik/Documents/Pratik/Work/practice/py-data-analysis", out="/Users/Pratik/Documents/Pratik/Work/practice/py-data-analysis/extracted"):
os.chdir(indir)
archives = glob.glob("*.gz")
if not os.path.exists(out):
os.mkdirs(out)
files = os.listdir("extracted")
for archive in archives:
if archive[:-3] not in files:
patoolib.extract_archive(archive, outdir=out)
def scan_archives(self):
for file_path in utils.get_files(self.unsorted_path):
if utils.is_compressed(file_path, self.extensions):
patoolib.extract_archive(
file_path, outdir=self.unsorted_path, verbosity=-1
)
self.process_response(['info', f'Extracting {file_path}'])
response = utils.delete_file(file_path)
self.process_response(response)
def download():
"""
Download Tourism dataset.
"""
if os.path.isdir(DATASET_PATH):
logging.info(f'skip: {DATASET_PATH} directory already exists.')
return
download(DATASET_URL, DATASET_FILE_PATH)
patoolib.extract_archive(DATASET_FILE_PATH, outdir=DATASET_PATH)
def _load_data(self, rdir, infos, filestring):
self.X = np.zeros((0, 250000))
## w
for idx, info in enumerate(infos):
# directory to put the raw rar file
rawdir = os.path.join(rdir, 'raw')
self._mkdir(rawdir)
# path to find the file
fpath = os.path.join(rawdir, info[0] + '.rar')
# if file already exists, avoid duplicate downloads
if not os.path.exists(fpath):
print("no dir/file")
self._download(fpath, info[3].rstrip('\n'))
# compressed file to uncompress
cmpfile = rawdir + '/' + info[0] + '.rar'
print("file to exrtract is is::")
print(cmpfile)
# unpack file
if not os.path.exists(rdir + '/' + info[0]):
pa.extract_archive(cmpfile, outdir=rdir, program=rarpath)
else:
print("file already extracted, skipping unrar")
# a list of all files in the extracted dir
ddir = rdir + '/' + info[0]
flist_all = os.listdir(ddir)
# print("filelist:")
# print(flist_all)
# use the searchstring, build from the program arguments to find files of interest
flistsorted = [i for i in flist_all if filestring in i]
print("sorted filelist:")
print(flistsorted)
# now build the dataset from all files of interest
# iterate through the filelist
for f in flistsorted:
# load matlab file
mat_dict = loadmat(ddir + '/' + f) #,struct_as_record=False)
# get the values key, tha name of thenactual dataset equal to filename
#key = list(filter(lambda x: 'N15_M07_F04_' in x, mat_dict.keys()))
key = list(filter(lambda x: filestring in x, mat_dict.keys()))
# load data
#time_series = mat_dict[key[0]][:, 0] #['Y']
time_series = mat_dict[key[0]]['Y'][0, 0][0, 6][2][:][0]
self.X = np.vstack((self.X, time_series[0:250000]))
def extract() -> None:
try:
os.mkdir(os.path.join(cd, "ttsdk"))
except FileExistsError:
shutil.rmtree(os.path.join(cd, "ttsdk"))
os.mkdir(os.path.join(cd, "ttsdk"))
patoolib.extract_archive(
os.path.join(cd, "ttsdk.7z"), outdir=os.path.join(cd, "ttsdk")
)
def scan_archives(self):
for file_path in utils.get_files(self.unsorted_path):
if utils.is_compressed(file_path, self.extensions):
patoolib.extract_archive(file_path,
outdir=self.unsorted_path,
verbosity=-1)
self.process_response(['info', f'Extracting {file_path}'])
response = utils.delete_file(file_path)
self.process_response(response)
def download_delta(self):
""" Функция последовательно:
1) Проверяет наличие новых дельт,
2) Скачивает архивы дельт
3) Распаковывает архивы, получая XML для каждой из таблиц
4) Вызывает функцию загрузки каждого из файлов"""
# I. Запрашиваем информацию о последних дельтах
# Подробнее на: https://fias.nalog.ru/WebServices/Public/DownloadService.asmx?op=GetLastDownloadFileInfo
envelope = """<?xml version="1.0" encoding="utf-8"?>
<soap:Envelope xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/">
<soap:Body>
<GetAllDownloadFileInfo xmlns="https://fias.nalog.ru/WebServices/Public/DownloadService.asmx" />
</soap:Body>
</soap:Envelope>""".encode('utf-8')
headers = {'Host': 'fias.nalog.ru', 'Content-Type': 'text/xml; charset=utf-8', 'Content-Length': str(len(envelope))}
response = requests.post(url='https://fias.nalog.ru/WebServices/Public/DownloadService.asmx', headers=headers, data=envelope)
tree = ElementTree.fromstring(response.content)
ns = {'ns': 'https://fias.nalog.ru/WebServices/Public/DownloadService.asmx'}
# II. Получаем последнюю загруженную версию дельты
current_version = 574 # TODO: current_version брать из базы
# III. Итерируемся по каждой записи из списка дельт
for el in tree.findall('.//ns:DownloadFileInfo', ns):
version = int(el.find('.//ns:VersionId', ns).text)
delta = el.find('.//ns:FiasDeltaXmlUrl', ns).text
file_name = 'fias_delta_xml.rar'
# Если версия дельты больше загруженной:
if version > int(current_version):
current_version = str(version) # TODO: current_version записывать в базу
# 1) Скачиваем и сохраняем архив с XML-файлами
response = requests.get(delta)
rar = os.path.join(settings.FIAS_DIR, current_version, file_name)
os.makedirs(os.path.dirname(rar), exist_ok=True)
with open(rar, 'wb') as f:
f.write(response.content)
# 2) Распаковываем архив
patoolib.extract_archive(rar, outdir=os.path.join(settings.FIAS_DIR, current_version), interactive=False)
# 3) Вызываем функцию загрузки для каждого из файлов
for file in self.models.keys():
self.load_to_db(file=file, delta=current_version)
def unzip(self, base_dir):
for root, dirs, files in os.walk(base_dir):
if files:
for i in files:
if i.endswith(self.extensions):
#print os.path.join(root,i)
Archive(os.path.join(root,i)).extractall(os.path.join(root))
elif i.endswith('rar'):
print i
extract_archive(os.path.join(root,i), outdir=os.path.join(root))
def unrar_files(root, files):
for file in files:
filename, file_extension = os.path.splitext(file)
if (file_extension == ".rar"):
print("rar file: ", file)
file_to_extract = os.path.join(root, file)
print ("to extract: ", file_to_extract)
patoolib.extract_archive(file_to_extract, outdir=root, program = rar_program, interactive=False)
if (".part" in file):
break
def extractFiles(indir="C:\\dest",out="C:\\dest\\Extracted"):
os.chdir(indir)
archives=glob.glob("*.gz")
print (archives)
if not os.path.exists(out):
os.makedirs(out)
files=os.listdir("Extracted")
print(files)
for archive in archives:
if archive[:-3] not in files:
patoolib.extract_archive(archive,outdir=out)
def unpackRAR(date):
filename = date + '.rar'
patoolib.extract_archive(filename, outdir=".")
# 将原文件移动到新的目录‘newdata’中
oldfilepath = "./ProcessFile/Stk_Day/Stk_Day_Idx_Daily/%s.csv" % date
newfilepath = "./newdata/"
shutil.move(oldfilepath, newfilepath)
# 删除rar归档及ProcessFile
shutil.rmtree("./ProcessFile")
os.remove(filename)
def unpackTo(self, outdir): # if directory exists and has files we assume that we already successfully extracted the archive if os.path.isdir(outdir): for dirpath, dirnames, files in os.walk(outdir): if len(files): return # make sure the outdir exists, but is empty createDirectory(outdir, deleteBefore=True) try: patoolib.extract_archive(self.filename, outdir=outdir) except: shutil.rmtree(outdir) raise
def unzip():
db = conn()
filename = request.args.get('o_id')
parts_dir = os.path.join(current_app.config['UPLOAD'], "%s" % filename.split('.')[0])
destination_path = os.path.join(parts_dir, "%s" % (filename))
patoolib.extract_archive(destination_path,outdir=parts_dir)
for root, dirs, files in os.walk(os.path.join(parts_dir, "%s" % (filename.split('.')[0]))):
for name in files:
if name == 'ENBCFG.XML.gz':
patoolib.extract_archive(os.path.join(root, name),outdir=root)
# print(os.path.join(root, 'ENBCFG.XML'))
xmlImport.xml_import(db, os.path.join(root, 'ENBCFG.XML'), filename.split('.')[0])
db['ManagerInfo'].update({'_id':filename},{'$set':{'operator':'未分析','status':'已导入'}})
data = db['ManagerInfo'].find().sort('_id')
return render_template('upload.html', data=data)
def convert(min_length, extract = True, delete_tmp = False, zip_after = False):
none_type_counter = 0
files_counter = 0
os.chdir(main_dir)
if not extract:
none_type_counter, files_counter = convert_all_html_files(min_length)
else:
files_years = os.listdir(os.curdir)
for file_rar in files_years:
if '.rar' in file_rar and os.path.isfile(file_rar):
if os.path.isdir(tmp_dir):
shutil.rmtree(tmp_dir)
os.makedirs(tmp_dir)
else:
os.makedirs(tmp_dir)
patoolib.extract_archive(file_rar, outdir = tmp_dir)
new_ntc, new_fc = convert_all_html_files(min_length)
none_type_counter += new_ntc
files_counter += new_fc
logging.info('Zakonczono konwertowanie')
logging.info('Liczba przekonwertowanych plikow {0}'.format(files_counter))
logging.info('Liczba plikow konczacych sie na NoneType, zamiast <META> to: {0}'.format(none_type_counter))
os.chdir('../')
if zip_after:
try:
with tarfile.open(file_zip_after, "w:gz") as tar:
tar.add(results_dir, arcname = os.path.basename(results_dir))
logging.info('Spakowano efekty do {0}'.format(file_zip_after))
except:
logging.error('Wystapil blad przy pakowaniu wynikow pracy')
zip_after = False
if delete_tmp:
try:
shutil.rmtree(main_dir)
if zip_after:
shutil.rmtree(results_dir)
logging.info('Skasowane pliki tymczasowe')
except:
logging.error('Wystapil blad przy kasowaniu tymczasowych plikow')
def unpack(path):
for subdir, dirs, files in os.walk(path):
print 'subdir[' + subdir + ']'
print 'dirs[' + ",".join(dirs) + ']'
print 'files[' + ",".join(files) + ']'
for file in files:
f = os.path.join(subdir, file)
print 'file[' + f + ']'
if os.path.isfile(f):
print 'file[' + f + ']'
if file.endswith('gz'):
fo = f[:-3]
with gzip.open(f, 'rb') as f_in, open(fo, 'wb') as f_out :
shutil.copyfileobj(f_in, f_out)
f_in.close();
f_out.close();
os.remove(f)
print 'gunzip ' + fo
return False
elif file.endswith('tar'):
tfile = tarfile.open(f, 'r')
tfile.extractall(subdir)
tfile.close()
os.remove(f)
print 'untar ' + f
return False
elif file.endswith('zip'):
zip_ref = zipfile.ZipFile(f) # create zipfile object
zip_ref.extractall(subdir) # extract file to dir
zip_ref.close() # close file
os.remove(f) # delete zipped file
print 'unzip ' + f
return False
elif file.endswith('rar'):
#rar_ref = rarfile.RarFile(f)
#rar_ref.extractall(subdir)
#rar_ref.close()
patoolib.extract_archive(f, outdir=subdir)
os.remove(f)
print 'unrar ' + f
return False
else:
unpack(file)
print 'unpack done!!'
return True
def __extract(self):
target = self.data['target']
source_volume = self.get_volume(target)
archive_file = source_volume.get_info(target)
archive_file_path = source_volume._find_path(target)
archive_name = archive_file_path.split('/')[-1].split('.')[0]
folder_path = os.path.join(
source_volume._find_path(archive_file.get('phash')),
archive_name
)
self.get_volume(archive_file.get('phash')).mkdir(archive_name, archive_file.get('phash'))
patoolib.extract_archive(archive_file_path, outdir=folder_path, interactive=False)
added = []
for node in source_volume.get_tree(archive_file.get('phash')):
if source_volume._find_path(node['hash']) == folder_path:
added.append(node)
self.response.update({"added": added})
def extractFiles(inDir, outDir):
os.chdir(inDir)
#Create a list of gz files in directory
archives = glob.glob("*.gz")
#Check to see if outDir exists, if not create it
if not os.path.exists(outDir):
os.makedirs(outDir)
#Assign list of files in directory that have already been extracted
files = os.listdir(outDir)
#Unpack archiver files
for archFiles in archives:
#only if file doesn't already exist, extract it
if archFiles[:-3] not in files:
patoolib.extract_archive(archFiles, outdir=outDir)
def extract_nested(folder):
"""
Unzip, untar, unrar, or whatever any file found in the student submission.
"""
import patoolib
supported_suffixes = ('.zip', '.rar', '.tar.gz', '.tgz', '.tar.bz2',
'.tar.xz', '.7z', '.tar')
for root, dirs, files in os.walk(folder):
for f in files:
if f.endswith(supported_suffixes):
try:
archive = os.path.join(root, f)
vprint('Extracting archive: "%s"' % archive)
patoolib.extract_archive(archive, verbosity=-1,
interactive=False, outdir=root)
os.remove(archive)
except patoolib.util.PatoolError as e:
print(e, file=sys.stderr)
print('Failed to extract "%s"' % archive, file=sys.stderr)
def run(unpack=True):
# Get data directory from environment
datadir = os.environ.get('CORINE_DATA_DIRECTORY', '')
if not datadir:
print('Datadir not found, please specify CORINE_DATA_DIRECTORY env var.')
return
for url in const.SOURCE_URLS_18_4:
filepath = os.path.join(datadir, os.path.basename(url))
print('Downloading file', url, filepath)
response = requests.get(url, stream=True)
with open(filepath, "wb") as handle:
for data in response.iter_content(chunk_size=1024):
if data:
handle.write(data)
if unpack:
print('Unpacking file', filepath)
patoolib.extract_archive(filepath, outdir=datadir)
def archive_extractor(input_dir, output_dir):
os.chdir(input_dir)
for dirname, dirnames, filenames in os.walk(input_dir):
for filename in filenames:
print(filename)
if filename.endswith('zip') or filename.endswith('rar'):
try:
patoolib.extract_archive(filename, outdir=output_dir)
print(filename, 'extracted')
first_sub_dir = next(os.walk('.'))[1][0]
sub_dir = input_dir + '\\' + first_sub_dir
print(sub_dir)
new_output = sub_dir + '\output'
if not os.path.exists(new_output):
os.makedirs(new_output)
archive_extractor(sub_dir, new_output)
except PatoolError as e:
print(e)
os.chdir('..')
def __unzip_to_dir(self,zippedfile,dest_directory):
ret = True
try:
#unzip into directory(make it if necessary)
tmpZip = zipfile.ZipFile(zippedfile)
tmpZip.extractall(dest_directory)
self.logger.info("Extracting files to:"+dest_directory)
except:
self.logger.debug("Error Unzipping zip:" + zippedfile + "\ntrying rar:", exc_info=True)
filenameonly,file_ext = os.path.splitext(zippedfile)
if file_ext == '.rar':
try:
#OK lets try .rar extractor
#first create directory
if not os.path.exists(dest_directory):
os.makedirs(dest_directory)
self.logger.info(" Unzip failed trying .rar file to:"+dest_directory)
#then extract
patoolib.extract_archive(zippedfile,verbosity=1, outdir=dest_directory)
except:
self.logger.debug("Error cannot extract rar file", exc_info=True)
ret= False
return ret
def _archive_extract (self, archive, check, verbosity=0):
# create a temporary directory for extraction
tmpdir = patoolib.util.tmpdir(dir=basedir)
try:
olddir = patoolib.util.chdir(tmpdir)
try:
output = patoolib.extract_archive(archive, program=self.program, verbosity=verbosity)
if check:
self.check_extracted_archive(archive, output, check)
finally:
if olddir:
os.chdir(olddir)
finally:
shutil.rmtree(tmpdir)
def ftpDownloader(Id,startID,endID,url="<url here>",user="******",passwd="<password here>"):
ftp=FTP(url)
ftp.login(user,passwd)
if not os.path.exists(pathname):
os.makedirs(pathname)
print(ftp.nlst())
ftp.cwd("<ftp working durectory here>")
os.chdir(pathname)
for array in range(startID, endID+1):
#Enter full path below, including start and stop IDs
fullpath='<insert ftp path here>' % (array,Id,array)
filename=os.path.basename(fullpath)
try:
with open(filename,'wb') as file:
ftp.retrbinary('RETR %s' % fullpath, file.write)
print("%s downloaded" % filename)
if filename[-3:] == ".gz" or filename[-4:] == ".zip" or filename[-4:] == ".tar":
patoolib.extract_archive(filename,outdir="unpack")
except error_perm:
print("%s is not available" % filename)
os.remove(filename)
ftp.close()
def archive2dir(archive, remove_dir_structure, out_dir):
if remove_dir_structure:
result_dir = os.path.join(out_dir, str(uuid.uuid4()))
create_dirs(result_dir)
# make temporary directory
tempdir = tempfile.mkdtemp()
# extract archive to temporary directory
patoolib.extract_archive(archive, outdir=tempdir)
# copy extracted files to output dir
files = get_files(tempdir, recursive=True)
for f in files:
fo = out_file_name(result_dir, f)
# don't copy if it's the same file
if os.path.abspath(f) != fo:
shutil.copy2(f, fo)
# remove temporary directory and its contents
shutil.rmtree(tempdir)
else:
# extract archive to temporary directory
patoolib.extract_archive(archive, outdir=out_dir)
def check_created_archive_with_diff(self, archive, srcfiles):
"""Extract created archive again and compare the contents."""
# diff srcfile and output
diff = patoolib.util.find_program("diff")
if not diff:
return
program = self.program
# special case for programs that cannot extract what they create
if self.program == 'compress':
program = 'gzip'
elif self.program == 'zip':
program = 'unzip'
elif self.program == 'lcab':
program = 'cabextract'
elif self.program == 'shar':
program = 'unshar'
elif self.program == 'genisoimage':
program = '7z'
tmpdir = patoolib.util.tmpdir(dir=basedir)
try:
olddir = patoolib.util.chdir(tmpdir)
try:
output = patoolib.extract_archive(archive, program=program)
if len(srcfiles) == 1:
source = os.path.join(datadir, srcfiles[0])
patoolib.util.run_checked([diff, "-urN", source, output])
else:
for srcfile in srcfiles:
source = os.path.join(datadir, srcfile)
target = os.path.join(output, srcfile)
patoolib.util.run_checked([diff, "-urN", source, target])
finally:
if olddir:
os.chdir(olddir)
finally:
shutil.rmtree(tmpdir)
archive_suffix = ['.rar', '.zip', '.7z', '.tar', '.gz', '.tgz', '.tar.gz', 'xz', '.bz2'] def unpack_file(zipfile, outpath='.'): tmpdir = os.path.join(outpath, TMP_DIR) try: if not os.path.exists(outpath): os.mkdir(outpath) os.mkdir(tmpdir) except OSError, e: print "mkdir %s failed: %s" %(tmpdir, str(e)) return -1 try: patoolib.extract_archive(zipfile, outdir=tmpdir) except patoolib.PatoolError: # TODO: mark zipfile in RED print "unpack file %s failed!" %zipfile return -1 else: all_files = os.listdir(tmpdir) if len(all_files) == 1: shutil.move(os.path.join(tmpdir, all_files[0]), outpath) os.rmdir(tmpdir) elif len(all_files) > 1: barename = os.path.basename(zipfile) for suffix in archive_suffix: barename = barename.split(suffix)[0] newdir = os.path.join(outpath, barename) os.rename(tmpdir, newdir)
def __extractor__extract_rar(self, dst_dir_path):
patoolib.extract_archive(self.archive_path, outdir=dst_dir_path)
def extract_archive(filename, directory):
patoolib.extract_archive(filename, outdir=directory)