def __init__(self, *args):
#
# Implementation notes: find all the bas/bax files, and group
# them together by movieName
#
basFilenames = []
for arg in args:
if arg.endswith(".fofn"):
for fn in readFofn(arg):
basFilenames.append(fn)
else:
basFilenames.append(arg)
movieNames = map(sniffMovieName, basFilenames)
movieNamesAndFiles = sorted(zip(movieNames, basFilenames))
self.readers = OrderedDict(
[ (k , BasH5Reader(*[val[1] for val in v]))
for k, v in groupby(movieNamesAndFiles, lambda t: t[0]) ])
def __init__(self, *args):
#
# Implementation notes: find all the bas/bax files, and group
# them together by movieName
#
basFilenames = []
for arg in args:
if arg.endswith(".fofn"):
for fn in readFofn(arg):
basFilenames.append(fn)
else:
basFilenames.append(arg)
movieNames = list(map(sniffMovieName, basFilenames))
movieNamesAndFiles = sorted(zip(movieNames, basFilenames))
self.readers = OrderedDict(
[ (k , BasH5Reader(*[val[1] for val in v]))
for k, v in groupby(movieNamesAndFiles, lambda t: t[0]) ])
def __init__(self, *args):
bcFilenames = []
for arg in args:
if arg.endswith(".fofn"):
for fn in readFofn(arg):
bcFilenames.append(fn)
else:
bcFilenames.append(arg)
self._bcH5s = [BarcodeH5Reader(fname) for fname in
bcFilenames]
self._byMovie = {}
for bc in self._bcH5s:
if bc.movieName not in self._byMovie:
self._byMovie[bc.movieName] = [bc]
else:
self._byMovie[bc.movieName].append(bc)
self.mpReaders = { movieName: parts[0] if len(parts) == 1 else MPBarcodeH5Reader(parts)
for movieName, parts in self._byMovie.iteritems() }
def __init__(self, *args):
bcFilenames = []
for arg in args:
if arg.endswith(".fofn"):
for fn in readFofn(arg):
bcFilenames.append(fn)
else:
bcFilenames.append(arg)
self._bcH5s = [BarcodeH5Reader(fname) for fname in
bcFilenames]
self._byMovie = {}
for bc in self._bcH5s:
if bc.movieName not in self._byMovie:
self._byMovie[bc.movieName] = [bc]
else:
self._byMovie[bc.movieName].append(bc)
self.mpReaders = { movieName: parts[0] if len(parts) == 1 else MPBarcodeH5Reader(parts)
for movieName, parts in self._byMovie.iteritems() }