def pd_evolve_population():
past_organisms = {}
organisms = create_initial_population()
output = []
headers = []
for i in range(pd_org.MAX_BITS_OF_MEMORY + 1):
headers.append("Organisms With " + str(i) + " Bits of Memory")
output.append(headers)
for org in organisms:
#adding into the dictionary
if org in past_organisms:
past_organisms[org].append(org)
else:
past_organisms[org] = [org]
pd_make_detail_file.make_file_detail(organisms, past_organisms, 0)
for i in range(NUMBER_OF_GENERATIONS):
organisms = pd_selection.get_next_generation_by_selection(organisms)
organisms = get_mutated_population(organisms)
output.append(
pd_analysis.get_tally_of_number_of_bits_of_memory(organisms))
for org in organisms:
#adding into the dictionary
if org in past_organisms:
past_organisms[org].append(org)
else:
past_organisms[org] = [org]
if ((i + 1) % OUTPUT_FREQUENCY == 0):
pd_make_detail_file.make_file_detail(organisms, past_organisms,
i + 1)
return output
def pd_evolve_population():
past_organisms = {}
organisms = create_initial_population()
output = []
headers = []
for i in range(pd_org.MAX_BITS_OF_MEMORY + 1):
headers.append("Organisms With " + str(i) + " Bits of Memory")
output.append(headers)
for org in organisms:
#adding into the dictionary
if org in past_organisms:
past_organisms[org].append(org)
else:
past_organisms[org] = [org]
pd_make_detail_file.make_file_detail(organisms, past_organisms, 0)
for i in range(NUMBER_OF_GENERATIONS):
organisms = pd_selection.get_next_generation_by_selection(organisms)
organisms = get_mutated_population(organisms)
output.append(pd_analysis.get_tally_of_number_of_bits_of_memory(organisms))
for org in organisms:
#adding into the dictionary
if org in past_organisms:
past_organisms[org].append(org)
else:
past_organisms[org] = [org]
if ( (i + 1) % OUTPUT_FREQUENCY == 0):
pd_make_detail_file.make_file_detail(organisms, past_organisms, i + 1)
return output
def test_get_tally_of_number_of_bits_of_memory(self):
"""
Returns a list of length MAX_BITS_OF_MEMORY + 1 where each position represents the number
of organisms with that many number of bits of memory
"""
pd_org.MAX_BITS_OF_MEMORY = 4
organism_a = pd_org.PDOrg(pd_org.MemoryPDGenotype(1,[True, False], [False]))
organism_b = pd_org.PDOrg(pd_org.MemoryPDGenotype(2,[True, False, False, True], [False, True]))
organisms = [organism_a, organism_b, organism_a, organism_a]
tally = pd_analysis.get_tally_of_number_of_bits_of_memory(organisms)
expected = [0, 3, 1, 0, 0]
self.assertEqual(tally, expected)
def test_get_tally_of_number_of_bits_of_memory(self):
"""
Returns a list of length MAX_BITS_OF_MEMORY + 1 where each position represents the number
of organisms with that many number of bits of memory
"""
pd_org.MAX_BITS_OF_MEMORY = 4
organism_a = pd_org.PDOrg(
pd_org.MemoryPDGenotype(1, [True, False], [False]))
organism_b = pd_org.PDOrg(
pd_org.MemoryPDGenotype(2, [True, False, False, True],
[False, True]))
organisms = [organism_a, organism_b, organism_a, organism_a]
tally = pd_analysis.get_tally_of_number_of_bits_of_memory(organisms)
expected = [0, 3, 1, 0, 0]
self.assertEqual(tally, expected)
