def test_teardown_logging(self):
# create simple logger
logger = logging.getLogger('a_logger')
logger.addHandler(logging.StreamHandler())
stools.tearDownLogging('a_logger')
self.assertEqual(len(logger.handlers), 0)
del logger
def test_teardown_logging(self):
# create simple logger
logger = logging.getLogger('a_logger')
logger.addHandler(logging.StreamHandler())
stools.tearDownLogging('a_logger')
self.assertEqual(len(logger.handlers), 0)
del logger
def test_setup_logging(self):
logger = stools.setUpLogging(verbose=True, debug=True,
logname='a_logger')
# more than two handlers: console + log.txt
self.assertEqual(len(logger.handlers), 2)
# debug level
self.assertTrue(logger.level == 10)
# a log file has been created
self.assertTrue(os.path.isfile('log.txt'))
# bring down the logger
stools.tearDownLogging('a_logger')
# remove log file
os.remove('log.txt')
del logger
def test_setup_logging(self):
logger = stools.setUpLogging(verbose=True,
debug=True,
logname='a_logger')
# more than two handlers: console + log.txt
self.assertEqual(len(logger.handlers), 2)
# debug level
self.assertTrue(logger.level == 10)
# a log file has been created
self.assertTrue(os.path.isfile('log.txt'))
# bring down the logger
stools.tearDownLogging('a_logger')
# remove log file
os.remove('log.txt')
del logger
def test_sort_args(self):
# make sure error is raised if no names.txt
directory = '.'
email = 'an.email'
logger = stools.setUpLogging(verbose=False, debug=False,
logname='testlogger')
with self.assertRaises(stools.PrimingError):
stools.sortArgs(directory, email, logger)
# create a names.txt and test arguments returned
names = ['name1', 'name2', 'name3', 'name4', 'name5', 'name6']
with open('names.txt', 'w') as file:
for name in names:
file.write(name + '\n')
res = stools.sortArgs(directory, email, logger)
self.assertTrue(isinstance(res['terms'], list))
self.assertTrue(isinstance(res['genedict'], dict))
self.assertTrue(isinstance(res['paradict'], dict))
os.remove('names.txt')
# bring down the logger
stools.tearDownLogging('testlogger')
# remove its log file
os.remove('log.txt')
def test_sort_args(self):
# make sure error is raised if no names.txt
directory = '.'
email = 'an.email'
logger = stools.setUpLogging(verbose=False,
debug=False,
logname='testlogger')
with self.assertRaises(stools.PrimingError):
stools.sortArgs(directory, email, logger)
# create a names.txt and test arguments returned
names = ['name1', 'name2', 'name3', 'name4', 'name5', 'name6']
with open('names.txt', 'w') as file:
for name in names:
file.write(name + '\n')
res = stools.sortArgs(directory, email, logger)
self.assertTrue(isinstance(res['terms'], list))
self.assertTrue(isinstance(res['genedict'], dict))
self.assertTrue(isinstance(res['paradict'], dict))
os.remove('names.txt')
# bring down the logger
stools.tearDownLogging('testlogger')
# remove its log file
os.remove('log.txt')
