def test_populate_genes(connection, genes):
populate_genes(
connection=connection,
genes=genes,
)
cursor = get_cursor(connection=connection)
cursor.execute("SELECT * from gene where ensembl_id = 'ENSG00000070814'")
for row in cursor.fetchmany():
assert row['hgnc_symbol'] == "TCOF1"
def test_populate_genes(connection, genes):
populate_genes(
connection=connection,
genes=genes,
)
cursor = get_cursor(connection=connection)
cursor.execute("SELECT * from gene where ensembl_id = 'ENSG00000070814'")
for row in cursor.fetchmany():
assert row['hgnc_symbol'] == "TCOF1"
def database(request, connection, hpo_terms, mim_terms, genes):
"""Return a populated database"""
populate_hpo(
connection=connection,
hpo_terms=hpo_terms,
)
populate_disease(
connection=connection,
disease_terms=mim_terms
)
populate_genes(
connection=connection,
genes=genes
)
return connection