def load_indexed_gff_chrom(indexed_gff_chrom_filename):
"""
Load indexed representation of a GFF chromosome.
"""
indexed_gff_chrom = pickle_utils.load_pickled_file(
indexed_gff_chrom_filename)
return indexed_gff_chrom
def load_from_pickle_file(self, pickle_filename):
print "Called on: ", pickle_filename
# clear currently loaded events, if any
self.clear_events()
# Modify events directly
t1 = time.time()
self.events = pickle_utils.load_pickled_file(pickle_filename)
t2 = time.time()
print "Loading from Pickle file took %.2f seconds." %(float(t2 - t1))
self.num_events = len(self.events)
def load_from_pickle_file(self, pickle_filename):
print "Called on: ", pickle_filename
# clear currently loaded events, if any
self.clear_events()
# Modify events directly
t1 = time.time()
self.events = pickle_utils.load_pickled_file(pickle_filename)
t2 = time.time()
print "Loading from Pickle file took %.2f seconds." % (float(t2 - t1))
self.num_events = len(self.events)
def load_indexed_gff_file(indexed_gff_filename):
"""
Load indexed representation of a set of genes.
"""
indexed_gff = pickle_utils.load_pickled_file(indexed_gff_filename)
return indexed_gff
def load_indexed_gff_chrom(indexed_gff_chrom_filename):
"""
Load indexed representation of a GFF chromosome.
"""
indexed_gff_chrom = pickle_utils.load_pickled_file(indexed_gff_chrom_filename)
return indexed_gff_chrom
def load_indexed_gff_file(indexed_gff_filename):
"""
Load indexed representation of a set of genes.
"""
indexed_gff = pickle_utils.load_pickled_file(indexed_gff_filename)
return indexed_gff