def test_predict(self):
test_data = {'data': torch.rand(1, 3)}
model = SimpleModel()
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
cm = CheckpointsManager(fsm)
stages = [
TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))])),
ValidationStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
]
trainer = Trainer(BaseTrainConfig(model, stages, SimpleLoss(), torch.optim.SGD(model.parameters(), lr=1)), fsm)\
.set_epoch_num(1)
cm.subscribe2trainer(trainer)
trainer.train()
real_predict = trainer.data_processor().predict(test_data,
is_train=False)
fsm = FileStructManager(base_dir=self.base_dir, is_continue=True)
cm = CheckpointsManager(fsm)
predict = Predictor(model, checkpoints_manager=cm).predict(test_data)
self.assertTrue(
np.equal(real_predict.cpu().detach().numpy(),
predict.cpu().detach().numpy()))
def test_creation(self):
if os.path.exists(self.base_dir):
shutil.rmtree(self.checkpoints_dir, ignore_errors=True)
try:
FileStructManager(base_dir=self.base_dir, is_continue=False)
except FileStructManager.FSMException as err:
self.fail(
"Raise error when base directory exists: [{}]".format(err))
self.assertFalse(os.path.exists(self.base_dir))
try:
FileStructManager(base_dir=self.base_dir, is_continue=False)
except FileStructManager.FSMException as err:
self.fail("Raise error when base directory exists but empty: [{}]".
format(err))
os.makedirs(os.path.join(self.base_dir, 'new_dir'))
try:
FileStructManager(base_dir=self.base_dir, is_continue=False)
except:
self.fail(
"Error initialize when exists non-registered folders in base directory"
)
shutil.rmtree(self.base_dir, ignore_errors=True)
def __init__(self,
fsm: FileStructManager,
is_continue: bool,
network_name: str = None):
super().__init__()
self._writer = None
self._txt_log_file = None
fsm.register_dir(self)
directory = fsm.get_path(self)
if directory is None:
return
directory = os.path.join(
directory, network_name) if network_name is not None else directory
if not (fsm.in_continue_mode() or is_continue) and os.path.exists(
directory) and os.path.isdir(directory):
idx = 0
tmp_dir = directory + "_v{}".format(idx)
while os.path.exists(tmp_dir) and os.path.isdir(tmp_dir):
idx += 1
tmp_dir = directory + "_v{}".format(idx)
directory = tmp_dir
os.makedirs(directory, exist_ok=True)
self._writer = SummaryWriter(directory)
self._txt_log_file = open(os.path.join(directory, "log.txt"),
'a' if is_continue else 'w')
def test_pack(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
cm = CheckpointsManager(fsm)
with self.assertRaises(CheckpointsManager.CMException):
cm.pack()
os.mkdir(cm.weights_file())
os.mkdir(cm.optimizer_state_file())
with self.assertRaises(CheckpointsManager.CMException):
cm.pack()
shutil.rmtree(cm.weights_file())
shutil.rmtree(cm.optimizer_state_file())
f = open(cm.weights_file(), 'w')
f.close()
f = open(cm.optimizer_state_file(), 'w')
f.close()
f = open(cm.trainer_file(), 'w')
f.close()
try:
cm.pack()
except Exception as err:
self.fail('Exception on packing files: [{}]'.format(err))
for f in [cm.weights_file(), cm.optimizer_state_file()]:
if os.path.exists(f) and os.path.isfile(f):
self.fail("File '{}' doesn't remove after pack".format(f))
result = os.path.join(
fsm.get_path(cm, check=False, create_if_non_exists=False),
'last_checkpoint.zip')
self.assertTrue(os.path.exists(result) and os.path.isfile(result))
f = open(cm.weights_file(), 'w')
f.close()
f = open(cm.optimizer_state_file(), 'w')
f.close()
f = open(cm.trainer_file(), 'w')
f.close()
try:
cm.pack()
result = os.path.join(
fsm.get_path(cm, check=False, create_if_non_exists=False),
'last_checkpoint.zip.old')
self.assertTrue(os.path.exists(result) and os.path.isfile(result))
except Exception as err:
self.fail('Fail to pack with existing previous state file')
def test_initialisation(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
try:
cm = CheckpointsManager(fsm)
except Exception as err:
self.fail("Fail init CheckpointsManager; err: ['{}']".format(err))
with self.assertRaises(FileStructManager.FSMException):
CheckpointsManager(fsm)
os.mkdir(os.path.join(fsm.get_path(cm), 'test_dir'))
with self.assertRaises(FileStructManager.FSMException):
CheckpointsManager(fsm)
def train():
model = resnet18(classes_num=1, in_channels=3, pretrained=True)
train_config = TrainConfig(model, [train_stage, val_stage],
torch.nn.BCEWithLogitsLoss(),
torch.optim.Adam(model.parameters(), lr=1e-4))
file_struct_manager = FileStructManager(base_dir='data', is_continue=False)
trainer = Trainer(train_config, file_struct_manager,
torch.device('cuda:0')).set_epoch_num(2)
tensorboard = TensorboardMonitor(file_struct_manager,
is_continue=False,
network_name='PortraitSegmentation')
log = LogMonitor(file_struct_manager).write_final_metrics()
trainer.monitor_hub.add_monitor(tensorboard).add_monitor(log)
trainer.enable_best_states_saving(
lambda: np.mean(train_stage.get_losses()))
trainer.enable_lr_decaying(
coeff=0.5,
patience=10,
target_val_clbk=lambda: np.mean(train_stage.get_losses()))
trainer.add_on_epoch_end_callback(
lambda: tensorboard.update_scalar('params/lr',
trainer.data_processor().get_lr()))
trainer.train()
def test_unpack(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
cm = CheckpointsManager(fsm)
with open(cm.weights_file(), 'w') as f:
f.write('1')
with open(cm.optimizer_state_file(), 'w') as f:
f.write('2')
with open(cm.trainer_file(), 'w') as f:
f.write('3')
cm.pack()
try:
cm.unpack()
except Exception as err:
self.fail('Exception on unpacking')
for i, f in enumerate(
[cm.weights_file(),
cm.optimizer_state_file(),
cm.trainer_file()]):
if not (os.path.exists(f) and os.path.isfile(f)):
self.fail("File '{}' doesn't remove after pack".format(f))
with open(f, 'r') as file:
if file.read() != str(i + 1):
self.fail("File content corrupted")
def test_lr_decaying(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
stages = [
TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))])),
ValidationStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
]
trainer = Trainer(
BaseTrainConfig(model, stages, SimpleLoss(),
torch.optim.SGD(model.parameters(), lr=0.1)),
fsm).set_epoch_num(10)
def target_value_clbk() -> float:
return 1
trainer.enable_lr_decaying(0.5, 3, target_value_clbk)
trainer.train()
self.assertAlmostEqual(trainer.data_processor().get_lr(),
0.1 * (0.5**3),
delta=1e-6)
def test_base_ops(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
trainer = Trainer(
BaseTrainConfig(model, [], torch.nn.L1Loss(),
torch.optim.SGD(model.parameters(), lr=1)), fsm)
with self.assertRaises(Trainer.TrainerException):
trainer.train()
def test_saving_states(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
metrics_processor = MetricsProcessor()
stage = TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
class Losses:
def __init__(self):
self.v = []
self._fake_losses = [[i for _ in list(range(20))]
for i in [5, 4, 0, 2, 1]]
def on_stage_end(self, s: TrainStage):
s._losses = self._fake_losses[0]
del self._fake_losses[0]
self.v.append(np.mean(s.get_losses()))
losses = Losses()
events_container.event(stage,
'EPOCH_END').add_callback(losses.on_stage_end)
trainer = Trainer(
BaseTrainConfig(model, [stage], SimpleLoss(),
torch.optim.SGD(model.parameters(), lr=0.1)),
fsm).set_epoch_num(5)
metrics_processor.subscribe_to_stage(stage)
checkpoint_file = os.path.join(self.base_dir, 'checkpoints', 'last',
'last_checkpoint.zip')
best_checkpoint_file = os.path.join(self.base_dir, 'checkpoints',
'best', 'best_checkpoint.zip')
cm = CheckpointsManager(fsm).subscribe2trainer(trainer)
best_cm = CheckpointsManager(fsm, prefix='best')
bsd = BestStateDetector(trainer).subscribe2stage(stage).add_rule(
lambda: np.mean(stage.get_losses()))
events_container.event(bsd, 'BEST_STATE_ACHIEVED').add_callback(
lambda b: best_cm.save_trainer_state(trainer))
trainer.train()
self.assertTrue(os.path.exists(best_checkpoint_file))
best_cm.load_trainer_state(trainer)
self.assertEqual(2, trainer.cur_epoch_id() - 1)
self.assertTrue(os.path.exists(checkpoint_file))
cm.load_trainer_state(trainer)
self.assertEqual(4, trainer.cur_epoch_id() - 1)
def test_clear_files(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
cm = CheckpointsManager(fsm)
f = open(cm.weights_file(), 'w')
f.close()
f = open(cm.optimizer_state_file(), 'w')
f.close()
cm.clear_files()
for f in [cm.weights_file(), cm.optimizer_state_file()]:
if os.path.exists(f) and os.path.isfile(f):
self.fail("File '{}' doesn't remove after pack".format(f))
def test_train_stage(self):
data_producer = DataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))])
metrics_processor = FakeMetricsProcessor()
train_stage = TrainStage(data_producer).enable_hard_negative_mining(
0.1)
metrics_processor.subscribe_to_stage(train_stage)
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
Trainer(BaseTrainConfig(model, [train_stage], SimpleLoss(), torch.optim.SGD(model.parameters(), lr=1)), fsm) \
.set_epoch_num(1).train()
self.assertEqual(metrics_processor.call_num, len(data_producer))
def test_train(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
stages = [
TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))])),
ValidationStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
]
Trainer(BaseTrainConfig(model, stages, SimpleLoss(), torch.optim.SGD(model.parameters(), lr=1)), fsm) \
.set_epoch_num(1).train()
def test_metric_calc_in_train_loop(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
stages = [
TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))])),
ValidationStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
]
trainer = Trainer(BaseTrainConfig(model, stages, SimpleLoss(), torch.optim.SGD(model.parameters(), lr=1)), fsm) \
.set_epoch_num(2)
mp = MetricsProcessor()
metric1 = SimpleMetric(coeff=1, collect_values=True)
# metric2 = SimpleMetric(coeff=1.7, collect_values=True)
mp.add_metrics_group(MetricsGroup('grp1').add(metric1))
# mp.add_metrics_group(MetricsGroup('grp2').add(metric2))
mp.subscribe_to_stage(stages[0]) # .subscribe_to_stage(stages[1])
# mp.subscribe_to_trainer(trainer)
file_monitor_hub = FileLogMonitor(fsm).write_final_metrics()
MonitorHub(trainer).subscribe2metrics_processor(mp).add_monitor(
file_monitor_hub)
trainer.train()
with open(os.path.join(file_monitor_hub.get_dir(), 'metrics.json'),
'r') as metrics_file:
metrics = json.load(metrics_file)
self.assertAlmostEqual(
metrics['grp1/SimpleMetric'],
float(
np.mean([
F.pairwise_distance(i[0], i[1],
p=2).cpu().detach().numpy()
for i in metric1._inputs
])),
delta=1e-2)
def test_events(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
model = SimpleModel()
stage = TrainStage(
TestDataProducer([{
'data': torch.rand(1, 3),
'target': torch.rand(1)
} for _ in list(range(20))]))
trainer = Trainer(
BaseTrainConfig(model, [stage], SimpleLoss(),
torch.optim.SGD(model.parameters(), lr=0.1)),
fsm).set_epoch_num(3)
metrics_processor = MetricsProcessor().subscribe_to_stage(stage)
metrics_processor.add_metric(DummyMetric())
with MonitorHub(trainer) as mh:
def on_epoch_start(local_trainer: Trainer):
self.assertIs(local_trainer, trainer)
def on_epoch_end(local_trainer: Trainer):
self.assertIs(local_trainer, trainer)
self.assertIsNone(
local_trainer.train_config().stages()[0].get_losses())
def stage_on_epoch_end(local_stage: TrainStage):
self.assertIs(local_stage, stage)
self.assertEqual(20, local_stage.get_losses().size)
mh.subscribe2metrics_processor(metrics_processor)
events_container.event(
stage, 'EPOCH_END').add_callback(stage_on_epoch_end)
events_container.event(trainer,
'EPOCH_START').add_callback(on_epoch_start)
events_container.event(trainer,
'EPOCH_END').add_callback(on_epoch_end)
trainer.train()
self.assertEqual(None,
trainer.train_config().stages()[0].get_losses())
def train_fold(self, init_trainer: callable, model_name: str, out_dir: str, fold_num: int):
cur_folds = self._folds.copy()
val_fold = cur_folds.pop(fold_num)
folds = {'train': cur_folds, 'val': val_fold}
fsm = FileStructManager(base_dir=os.path.join(out_dir, model_name, val_fold), is_continue=False)
trainer = init_trainer(fsm, folds)
trainer.train()
meta_info = [{'model': model_name, 'fold': val_fold, 'path': os.path.join(model_name, val_fold)}]
self._folds.append(val_fold)
meta_file = os.path.join(out_dir, 'meta.json')
if os.path.exists(meta_file):
with open(meta_file, 'r') as meta_file:
exists_meta = json.load(meta_file)
meta_info = exists_meta + meta_info
with open(os.path.join(out_dir, 'meta.json'), 'w') as meta_file:
json.dump(meta_info, meta_file, indent=4)
def metrics_processing(self,
with_final_file: bool,
final_file: str = None):
fsm = FileStructManager(base_dir='data', is_continue=False)
base_dir = os.path.join('data', 'monitors', 'metrics_log')
expected_outs = [
os.path.join(base_dir, f) for f in [
'meta.json', 'd.csv',
os.path.join('lv1', 'a.csv'),
os.path.join('lv1', 'b.csv'),
os.path.join('lv1', 'lv2', 'c.csv')
]
]
metrics_group_lv1 = MetricsGroup('lv1').add(
SimpleMetric(name='a',
coeff=1)).add(SimpleMetric(name='b', coeff=2))
metrics_group_lv2 = MetricsGroup('lv2').add(
SimpleMetric(name='c', coeff=3))
metrics_group_lv1.add(metrics_group_lv2)
m = SimpleMetric(name='d', coeff=4)
values = []
with FileLogMonitor(fsm) as monitor:
if with_final_file:
monitor.write_final_metrics(final_file)
for epoch in range(10):
cur_vals = []
for i in range(10):
output, target = torch.rand(1, 3), torch.rand(1, 3)
metrics_group_lv1.calc(output, target)
m._calc(output, target)
cur_vals.append(
np.linalg.norm(output.numpy() - target.numpy()))
values.append(float(np.mean(cur_vals)))
monitor.set_epoch_num(epoch)
monitor.update_metrics({
'metrics': [m],
'groups': [metrics_group_lv1]
})
m.reset()
metrics_group_lv1.reset()
for out in expected_outs:
self.assertTrue(os.path.exists(out) and os.path.isfile(out))
with open(os.path.join(base_dir, 'meta.json'), 'r') as file:
meta = json.load(file)
self.assertIn("data/monitors/metrics_log/d.csv", meta)
self.assertEqual(meta["data/monitors/metrics_log/d.csv"], {
"name": "d",
"path": []
})
metrics_values = {}
for path, v in meta.items():
metrics_values[v['name']] = np.loadtxt(path, delimiter=',')
for i, v in enumerate(values):
self.assertAlmostEqual(metrics_values['d'][i][1:],
values[i] * 4,
delta=1e-5)
self.assertAlmostEqual(metrics_values['a'][i][1:],
values[i],
delta=1e-5)
self.assertAlmostEqual(metrics_values['b'][i][1:],
values[i] * 2,
delta=1e-5)
self.assertAlmostEqual(metrics_values['c'][i][1:],
values[i] * 3,
delta=1e-5)
return values
def test_object_registration(self):
fsm = FileStructManager(base_dir=self.base_dir, is_continue=False)
fsm_exist_ok = FileStructManager(base_dir=self.base_dir,
is_continue=False,
exists_ok=True)
o = self.TestObj(fsm, 'test_dir', 'test_name')
fsm.register_dir(o)
expected_path = os.path.join(self.base_dir, 'test_dir')
self.assertFalse(os.path.exists(expected_path))
self.assertEqual(fsm.get_path(o), expected_path)
with self.assertRaises(FileStructManager.FSMException):
fsm.register_dir(self.TestObj(fsm, 'test_dir', 'another_name'))
try:
fsm.register_dir(self.TestObj(fsm, 'test_dir', 'another_name'),
check_dir_registered=False)
fsm_exist_ok.register_dir(
self.TestObj(fsm, 'test_dir', 'another_name'))
fsm_exist_ok.register_dir(self.TestObj(fsm, 'test_dir',
'another_name2'),
check_dir_registered=False)
except:
self.fail("Folder registrable test fail when it's disabled")
with self.assertRaises(FileStructManager.FSMException):
fsm.register_dir(self.TestObj(fsm, 'another_dir', 'test_name'))
fsm.register_dir(self.TestObj(fsm, 'another_dir', 'another_name'))
with self.assertRaises(FileStructManager.FSMException):
fsm_exist_ok.register_dir(
self.TestObj(fsm, 'another_dir', 'test_name'))
fsm_exist_ok.register_dir(
self.TestObj(fsm, 'another_dir', 'another_name'))
try:
fsm.register_dir(self.TestObj(fsm, 'another_dir2', 'test_name'),
check_name_registered=False)
fsm_exist_ok.register_dir(self.TestObj(fsm, 'another_dir2',
'test_name'),
check_name_registered=False)
except:
self.fail("Folder registrable test fail when it's disabled")
os.makedirs(os.path.join(self.base_dir, 'dir_dir', 'dir'))
with self.assertRaises(FileStructManager.FSMException):
fsm.register_dir(self.TestObj(fsm, 'dir_dir', 'name_name'))
try:
fsm_exist_ok.register_dir(self.TestObj(fsm, 'dir_dir',
'name_name'))
except:
self.fail("Folder registrable test fail when exists_ok=True")
