def test_multi(self):
"""Test if correctly generated."""
get_fastqs = CheckDesign(test_exp_file)
self.assertEqual(get_fastqs.extract_sample_fastqs()['samp2'], [
"tests/data/fastqs/BTT_test25_R1.fastq:tests/data/fastqs/BTT_test25_R2.fastq",
"tests/data/fastqs/BTT_test15_R1.fastq:tests/data/fastqs/BTT_test15_R2.fastq"
])
def test_file_sep(self):
"""Test if correctly generated."""
fastqs = CheckDesign(test_exp_file)
self.assertEqual(
fastqs.extract_sample_fastqs()['samp1'],
"tests/data/fastqs/BTT_test15_R1.fastq:"
"tests/data/fastqs/BTT_test15_R2.fastq")
def test_sample_suff(self):
"""Test if there are enough samples, when both method is chosen."""
design = CheckDesign(test_exp_file)
self.assertTrue(design.sample_suff(method='both'))
def test_fastq_notexists(self):
"""Test if Fastq files in experimental design are not present."""
see_fastqs = CheckDesign(test_exp_file_wp)
with self.assertRaises(SystemExit):
see_fastqs.fastq_exists()
def test_group_name_true(self):
"""Test if true."""
group_name = CheckDesign(test_exp_file)
self.assertTrue(group_name.group_name())
def test_file_name_true(self):
"""Test if true."""
design = CheckDesign(test_exp_file)
self.assertTrue(design.file_name())
def test_header_true(self):
"""Test if True header is returned."""
design = CheckDesign(test_exp_file)
self.assertTrue(design.header())
def test_header_false(self):
"""Test if program SystemExit when header is not correct."""
design = CheckDesign(negatest_exp_file)
with self.assertRaises(SystemExit):
design.header()
def test_tab_true(self):
"""Test if it returns True when tab delimited file is given."""
design = CheckDesign(test_exp_file)
self.assertTrue(design.tab())
def test_tab_false(self):
"""Test if program SystemExit when tab delimited file is not given."""
design = CheckDesign("tests/__init__.py")
with self.assertRaises(SystemExit):
design.tab()