def test_captures_cardinality_axioms(self):
"""Tests the captures_cardinality_axioms method for a cardinality object."""
# set-up input
triples = [
(BNode('N6ebac'),
URIRef('http://www.w3.org/2002/07/owl#minQualifiedCardinality'),
Literal(
'2',
datatype=URIRef(
'http://www.w3.org/2001/XMLSchema#nonNegativeInteger'))),
(BNode('N6ebac'), OWL.onClass, obo.UBERON_0000061),
(BNode('N6ebac'), RDF.type, OWL.Restriction),
(BNode('N6ebac'), OWL.onProperty, obo.RO_0002180)
]
self.owl_nets.graph = adds_edges_to_graph(Graph(), triples)
# test method
self.owl_nets.captures_cardinality_axioms(
{str(obo.UBERON_0034923) + ': N6ebac'}, obo.UBERON_0034923)
card_triples = self.owl_nets.owl_nets_dict['cardinality']
self.assertIsInstance(card_triples, dict)
self.assertIsInstance(
card_triples['<http://purl.obolibrary.org/obo/UBERON_0034923>'],
set)
self.assertEqual(
len(card_triples['<http://purl.obolibrary.org/obo/UBERON_0034923>']
), 4)
return None
def test_reconciles_axioms(self):
"""Tests the reconciles_axioms method."""
# set-up testing data
triples = [
(BNode('N31fefc6d'), RDF.type, OWL.Axiom),
(BNode('N31fefc6d'), OWL.annotatedProperty, RDFS.subClassOf),
(BNode('N31fefc6d'), OWL.annotatedSource, obo.UBERON_0002373),
(BNode('N31fefc6d'), OWL.annotatedTarget, BNode('N26cd7b2c')),
(BNode('N26cd7b2c'), RDF.type, OWL.Restriction),
(BNode('N26cd7b2c'), OWL.onProperty, obo.RO_0002202),
(BNode('N26cd7b2c'), OWL.someValuesFrom, obo.UBERON_0010023),
(obo.UBERON_0010023, RDF.type, OWL.Class)
]
result = {(BNode('N26cd7b2c'), RDF.type, OWL.Restriction),
(BNode('N26cd7b2c'), OWL.onProperty, obo.RO_0002202),
(BNode('N26cd7b2c'), OWL.someValuesFrom, obo.UBERON_0010023)}
self.owl_nets.graph = adds_edges_to_graph(Graph(), triples)
# test method
node, matches = self.owl_nets.reconciles_axioms(
obo.UBERON_0002373, BNode('N26cd7b2c'))
self.assertIsInstance(node, URIRef)
self.assertIsInstance(matches, Set)
self.assertEqual(sorted(list(matches)), sorted(list(result)))
return None
def test_reconciles_classes(self):
"""Tests the reconciles_classes method."""
# set-up testing data
triples = [(obo.UBERON_0002374, RDFS.subClassOf, BNode('N41c7c5fd')),
(BNode('N41c7c5fd'), RDF.type, OWL.Restriction),
(BNode('N41c7c5fd'), OWL.onProperty, obo.BFO_0000050),
(BNode('N41c7c5fd'), OWL.someValuesFrom, obo.UBERON_0010544)
]
result = {(BNode('N41c7c5fd'), OWL.someValuesFrom, obo.UBERON_0010544),
(BNode('N41c7c5fd'), RDF.type, OWL.Restriction),
(BNode('N41c7c5fd'), OWL.onProperty, obo.BFO_0000050)}
self.owl_nets.graph = adds_edges_to_graph(Graph(), triples)
# test method
matches = self.owl_nets.reconciles_classes(obo.UBERON_0002374)
self.assertIsInstance(matches, Set)
self.assertEqual(sorted(list(matches)), sorted(list(result)))
return None
def test_finds_uri(self):
"""Tests the finds_bnode_uri method."""
# set-up testing data
triples = [
(BNode('N31fefc6d'), RDF.type, OWL.Axiom),
(BNode('N31fefc6d'), OWL.annotatedProperty, RDFS.subClassOf),
(BNode('N31fefc6d'), OWL.annotatedSource, obo.UBERON_0002373),
(BNode('N31fefc6d'), OWL.annotatedTarget, BNode('N26cd7b2c')),
(BNode('N26cd7b2c'), RDF.type, OWL.Restriction),
(BNode('N26cd7b2c'), OWL.onProperty, obo.RO_0002202),
(BNode('N26cd7b2c'), OWL.someValuesFrom, obo.UBERON_0010023),
(obo.UBERON_0010023, RDF.type, OWL.Class)
]
self.owl_nets.graph = adds_edges_to_graph(Graph(), triples)
# test method
node = self.owl_nets.finds_uri(BNode('N26cd7b2c'), obo.UBERON_0002373)
self.assertEqual(node, obo.UBERON_0010023)
return None
def test_removes_disjoint_with_axioms(self):
"""Tests the removes_disjoint_with_axioms method."""
# create test data
triples = [
(BNode('N9f94b'),
URIRef('http://www.geneontology.org/formats/oboInOwl#source'),
Literal(
'lexical',
datatype=URIRef('http://www.w3.org/2001/XMLSchema#string'))),
(BNode('N9f94b'), RDF.type, OWL.Axiom),
(BNode('N9f94b'), OWL.AnnotatedTarget, obo.UBERON_0022716),
(BNode('N9f94b'), OWL.AnnotatedSource, obo.UBERON_0022352),
(BNode('N9f94b'), OWL.AnnotatedProperty, OWL.disjointWith)
]
self.owl_nets.graph = adds_edges_to_graph(Graph(), triples, False)
# test method
self.owl_nets.removes_disjoint_with_axioms()
self.assertTrue(len(self.owl_nets.graph) == 4)
return None