def test_opencor_link(self):
context = self.layer['portal'].unrestrictedTraverse(
self.layer['exposure_file1_path'])
request = TestRequest(
form={
'form.widgets.annotators': [u'opencor'],
'form.buttons.apply': 1,
})
view = ExposureFileAnnotatorForm(context, request)
view.update() # should succeed.
note = zope.component.queryAdapter(context, name='opencor')
note.filename = 'README'
urltool = zope.component.queryAdapter(
context, IExposureNoteTarget, name='opencor')
url = urltool('opencor')
self.assertEqual(url,
'opencor://openFile/http://nohost/plone/workspace/rdfmodel/rawfile'
'/2/README')
# Not really needed any longer, but kept here for completness.
view = zope.component.queryMultiAdapter(
(context, self.layer['portal'].REQUEST), name='opencor')
view.__call__()
self.assertEqual(
view.request.response.headers,
{'location':
'http://nohost/plone/workspace/rdfmodel/@@rawfile/2/README'}
)
def test_base_codegen(self):
context = self.layer["portal"].unrestrictedTraverse(self.layer["exposure_file1_path"])
request = TestRequest(form={"form.widgets.annotators": [u"cellml_codegen"], "form.buttons.apply": 1})
view = ExposureFileAnnotatorForm(context, request)
view.update()
note = zope.component.getAdapter(context, name="cellml_codegen")
langkeys = note.code.keys()
self.assertIn("C", langkeys)
self.assertIn("F77", langkeys)
self.assertIn("MATLAB", langkeys)
self.assertIn("Python", langkeys)
def test_exposure_rdf_annotation(self):
gs = zope.component.getUtility(IPMR2GlobalSettings)
settings = zope.component.getAdapter(gs, name='pmr2_virtuoso')
engine = zope.component.getAdapter(settings, IEngine)
engine._clear()
self.assertEqual(len(engine.stmts), 0)
exposure = self.layer['portal'].virtuoso_exposure.virtuoso_test
context = exposure['simple.rdf']
request = TestRequest(form={
'form.widgets.annotators': [u'virtuoso_rdf'],
'form.buttons.apply': 1,
})
view = ExposureFileAnnotatorForm(context, request)
view.update()
# this should have indexed.
self.assertEqual(len(engine.stmts), 2)
engine._clear()
# follow up with post annotation
request = TestRequest(form={
'form.widgets.exclude_nav': 1,
'form.buttons.apply': 1,
})
annotator = zope.component.getUtility(IExposureFileAnnotator,
name='virtuoso_rdf')(context, request)
annotator(data=(('exclude_nav', 1),))
note = zope.component.getAdapter(context, name='virtuoso_rdf')
self.assertEqual(len(engine.stmts), 2)
self.assertEqual(engine.stmts[0], 'SPARQL '
'CLEAR GRAPH <urn:pmr:virtuoso:/plone/'
'virtuoso_exposure/virtuoso_test/simple.rdf>')
self.assertTrue(context.getExcludeFromNav())
annotator = zope.component.getUtility(IExposureFileAnnotator,
name='virtuoso_rdf')(context, request)
annotator(data=(('exclude_nav', 0),))
self.assertFalse(context.getExcludeFromNav())
def test_exposure_rdf_annotation_data_optional(self):
# data is actually optionally provided sometimes due to how
# there is only one field.
gs = zope.component.getUtility(IPMR2GlobalSettings)
settings = zope.component.getAdapter(gs, name='pmr2_virtuoso')
engine = zope.component.getAdapter(settings, IEngine)
engine._clear()
self.assertEqual(len(engine.stmts), 0)
exposure = self.layer['portal'].virtuoso_exposure.virtuoso_test
context = exposure['simple.rdf']
request = TestRequest(form={
'form.widgets.annotators': [u'virtuoso_rdf'],
'form.buttons.apply': 1,
})
view = ExposureFileAnnotatorForm(context, request)
view.update()
engine._clear()
# follow up with post annotation
request = TestRequest(form={
'form.widgets.exclude_nav': 1,
'form.buttons.apply': 1,
})
annotator = zope.component.getUtility(IExposureFileAnnotator,
name='virtuoso_rdf')(context, request)
# again, this has provided no data.
annotator(data=())
note = zope.component.getAdapter(context, name='virtuoso_rdf')
self.assertEqual(len(engine.stmts), 2)
self.assertEqual(engine.stmts[0], 'SPARQL '
'CLEAR GRAPH <urn:pmr:virtuoso:/plone/'
'virtuoso_exposure/virtuoso_test/simple.rdf>')