Beispiel #1
0
def main(argv=sys.argv[1:]):
    from polar2grid.core.script_utils import (
        setup_logging,
        create_basic_parser,
        create_exc_handler,
        rename_log_file,
        ExtendAction,
    )
    from polar2grid.compositors import CompositorManager

    frontends = available_frontends()
    backends = available_backends()
    parser = create_basic_parser(description="Extract swath data, remap it, and write it to a new file format")
    parser.add_argument(
        "frontend",
        choices=sorted(frontends.keys()),
        help="Specify the swath extractor to use to read data (additional arguments are determined after this is specified)",
    )
    parser.add_argument(
        "backend",
        choices=sorted(backends.keys()),
        help="Specify the backend to use to write data output (additional arguments are determined after this is specified)",
    )
    parser.add_argument(
        "--compositor-configs",
        nargs="*",
        default=None,
        help="Specify alternative configuration file(s) for compositors",
    )
    # don't include the help flag
    argv_without_help = [x for x in argv if x not in ["-h", "--help"]]
    args, remaining_args = parser.parse_known_args(argv_without_help)
    glue_name = args.frontend + "2" + args.backend
    LOG = logging.getLogger(glue_name)

    # Load compositor information (we can't know the compositor choices until we've loaded the configuration)
    compositor_manager = CompositorManager(config_files=args.compositor_configs)
    # Hack: argparse doesn't let you use choices and nargs=* on a positional argument
    parser.add_argument(
        "compositors",
        choices=compositor_manager.keys() + [[]],
        nargs="*",
        help="Specify the compositors to apply to the provided scene (additional arguments are determined after this is specified)",
    )

    # load the actual components we need
    farg_func = get_frontend_argument_func(frontends, args.frontend)
    fcls = get_frontend_class(frontends, args.frontend)
    barg_func = get_backend_argument_func(backends, args.backend)
    bcls = get_backend_class(backends, args.backend)

    # add_frontend_arguments(parser)
    subgroup_titles = []
    subgroup_titles += farg_func(parser)
    subgroup_titles += add_remap_argument_groups(parser)
    subgroup_titles += barg_func(parser)

    parser.add_argument(
        "-f",
        dest="data_files",
        nargs="+",
        default=[],
        action=ExtendAction,
        help="List of files or directories to extract data from",
    )
    parser.add_argument(
        "-d",
        dest="data_files",
        nargs="+",
        default=[],
        action=ExtendAction,
        help="Data directories to look for input data files (equivalent to -f)",
    )
    global_keywords = ("keep_intermediate", "overwrite_existing", "exit_on_error")
    args = parser.parse_args(argv, global_keywords=global_keywords, subgroup_titles=subgroup_titles)

    if not args.data_files:
        # FUTURE: When the -d flag is removed this won't be needed because -f will be required
        parser.print_usage()
        parser.exit(1, "ERROR: No data files provided (-f flag)\n")

    # Logs are renamed once data the provided start date is known
    rename_log = False
    if args.log_fn is None:
        rename_log = True
        args.log_fn = glue_name + "_fail.log"
    levels = [logging.ERROR, logging.WARN, logging.INFO, logging.DEBUG]
    setup_logging(console_level=levels[min(3, args.verbosity)], log_filename=args.log_fn)
    sys.excepthook = create_exc_handler(LOG.name)
    LOG.debug("Starting script with arguments: %s", " ".join(sys.argv))

    # Keep track of things going wrong to tell the user what went wrong (we want to create as much as possible)
    status_to_return = STATUS_SUCCESS

    # Compositor validation
    for c in args.compositors:
        if c not in compositor_manager:
            LOG.error("Compositor '%s' is unknown" % (c,))
            raise RuntimeError("Compositor '%s' is unknown" % (c,))

    # Frontend
    try:
        LOG.info("Initializing swath extractor...")
        list_products = args.subgroup_args["Frontend Initialization"].pop("list_products")
        f = fcls(search_paths=args.data_files, **args.subgroup_args["Frontend Initialization"])
    except StandardError:
        LOG.debug("Frontend exception: ", exc_info=True)
        LOG.error("%s frontend failed to load and sort data files (see log for details)", args.frontend)
        return STATUS_FRONTEND_FAIL

    # Rename the log file
    if rename_log:
        rename_log_file(glue_name + f.begin_time.strftime("_%Y%m%d_%H%M%S.log"))

    if list_products:
        print("\n".join(sorted(f.available_product_names)))
        return STATUS_SUCCESS

    try:
        LOG.info("Initializing remapping...")
        remapper = Remapper(**args.subgroup_args["Remapping Initialization"])
        remap_kwargs = args.subgroup_args["Remapping"]
    except StandardError:
        LOG.debug("Remapping initialization exception: ", exc_info=True)
        LOG.error("Remapping initialization failed (see log for details)")
        return STATUS_REMAP_FAIL

    try:
        LOG.info("Initializing backend...")
        backend = bcls(**args.subgroup_args["Backend Initialization"])
    except StandardError:
        LOG.debug("Backend initialization exception: ", exc_info=True)
        LOG.error("Backend initialization failed (see log for details)")
        return STATUS_BACKEND_FAIL

    try:
        LOG.info("Initializing compositor objects...")
        compositor_objects = {}
        for c in args.compositors:
            compositor_objects[c] = compositor_manager.get_compositor(c, **args.global_kwargs)
    except StandardError:
        LOG.debug("Compositor initialization exception: ", exc_info=True)
        LOG.error("Compositor initialization failed (see log for details)")
        return STATUS_COMP_FAIL

    try:
        LOG.info("Extracting swaths from data files available...")
        scene = f.create_scene(**args.subgroup_args["Frontend Swath Extraction"])
        if not scene:
            LOG.error("No products were returned by the frontend")
            raise RuntimeError("No products were returned by the frontend")
        if args.keep_intermediate:
            filename = glue_name + "_swath_scene.json"
            LOG.info("Saving intermediate swath scene as '%s'", filename)
            scene.save(filename)
    except StandardError:
        LOG.debug("Frontend data extraction exception: ", exc_info=True)
        LOG.error("Frontend data extraction failed (see log for details)")
        return STATUS_FRONTEND_FAIL

    # What grids should we remap to (the user should tell us or the backend should have a good set of defaults)
    known_grids = backend.known_grids
    LOG.debug("Backend known grids: %r", known_grids)
    grids = remap_kwargs.pop("forced_grids", None)
    LOG.debug("Forced Grids: %r", grids)
    if not grids and not known_grids:
        # the user didn't ask for any grids and the backend doesn't have specific defaults
        LOG.error("No grids specified and no known defaults")
        return STATUS_GDETER_FAIL
    elif not grids:
        # the user didn't tell us what to do, so let's try everything the backend knows how to do
        grids = known_grids
    elif known_grids is not None:
        # the user told us what to do, let's make sure the backend can do it
        grids = list(set(grids) & set(known_grids))
        if not grids:
            LOG.error("%s backend doesn't know how to handle any of the grids specified", args.backend)
            return STATUS_GDETER_FAIL
    LOG.debug("Grids that will be mapped to: %r", grids)

    # Remap
    gridded_scenes = {}
    for grid_name in grids:
        try:
            LOG.info("Remapping to grid %s", grid_name)
            gridded_scene = remapper.remap_scene(scene, grid_name, **remap_kwargs)
            gridded_scenes[grid_name] = gridded_scene
            if args.keep_intermediate:
                filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                LOG.debug("saving intermediate gridded scene as '%s'", filename)
                gridded_scene.save(filename)
        except StandardError:
            LOG.debug("Remapping data exception: ", exc_info=True)
            LOG.error("Remapping data failed")
            status_to_return |= STATUS_REMAP_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        # Composition
        for c, comp in compositor_objects.items():
            try:
                LOG.info("Running gridded scene through '%s' compositor", c)
                gridded_scene = comp.modify_scene(gridded_scene, **args.subgroup_args[c + " Modification"])
                if args.keep_intermediate:
                    filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                    LOG.debug("Updating saved intermediate gridded scene (%s) after compositor", filename)
                    gridded_scene.save(filename)
            except StandardError:
                LOG.debug("Compositor Error: ", exc_info=True)
                LOG.error("Could not properly modify scene using compositor '%s'" % (c,))
                if args.exit_on_error:
                    raise RuntimeError("Could not properly modify scene using compositor '%s'" % (c,))

        # Backend
        try:
            LOG.info("Creating output from data mapped to grid %s", grid_name)
            backend.create_output_from_scene(gridded_scene, **args.subgroup_args["Backend Output Creation"])
        except StandardError:
            LOG.debug("Backend output creation exception: ", exc_info=True)
            LOG.error("Backend output creation failed (see log for details)")
            status_to_return |= STATUS_BACKEND_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        LOG.info("Processing data for grid %s complete", grid_name)

    return status_to_return
Beispiel #2
0
def main(argv=sys.argv[1:]):
    from polar2grid.core.script_utils import setup_logging, create_basic_parser, create_exc_handler, rename_log_file, ExtendAction
    from polar2grid.compositors import CompositorManager
    frontends = available_frontends()
    backends = available_backends()
    parser = create_basic_parser(description="Extract swath data, remap it, and write it to a new file format")
    parser.add_argument("frontend", choices=sorted(frontends.keys()),
                        help="Specify the swath extractor to use to read data (additional arguments are determined after this is specified)")
    parser.add_argument("backend", choices=sorted(backends.keys()),
                        help="Specify the backend to use to write data output (additional arguments are determined after this is specified)")
    parser.add_argument("--compositor-configs", nargs="*", default=None,
                        help="Specify alternative configuration file(s) for compositors")
    # don't include the help flag
    argv_without_help = [x for x in argv if x not in ["-h", "--help"]]
    args, remaining_args = parser.parse_known_args(argv_without_help)
    glue_name = args.frontend + "2" + args.backend
    LOG = logging.getLogger(glue_name)

    # Load compositor information (we can't know the compositor choices until we've loaded the configuration)
    compositor_manager = CompositorManager(config_files=args.compositor_configs)
    # Hack: argparse doesn't let you use choices and nargs=* on a positional argument
    parser.add_argument("compositors", choices=list(compositor_manager.keys()) + [[]], nargs="*",
                        help="Specify the compositors to apply to the provided scene (additional arguments are determined after this is specified)")

    # load the actual components we need
    farg_func = get_frontend_argument_func(frontends, args.frontend)
    fcls = get_frontend_class(frontends, args.frontend)
    barg_func = get_backend_argument_func(backends, args.backend)
    bcls = get_backend_class(backends, args.backend)

    # add_frontend_arguments(parser)
    subgroup_titles = []
    subgroup_titles += farg_func(parser)
    subgroup_titles += add_remap_argument_groups(parser)
    subgroup_titles += barg_func(parser)

    parser.add_argument('-f', dest='data_files', nargs="+", default=[], action=ExtendAction,
                        help="List of files or directories to extract data from")
    parser.add_argument('-d', dest='data_files', nargs="+", default=[], action=ExtendAction,
                        help="Data directories to look for input data files (equivalent to -f)")
    global_keywords = ("keep_intermediate", "overwrite_existing", "exit_on_error")
    args = parser.parse_args(argv, global_keywords=global_keywords, subgroup_titles=subgroup_titles)

    if not args.data_files:
        # FUTURE: When the -d flag is removed this won't be needed because -f will be required
        parser.print_usage()
        parser.exit(1, "ERROR: No data files provided (-f flag)\n")

    # Logs are renamed once data the provided start date is known
    rename_log = False
    if args.log_fn is None:
        rename_log = True
        args.log_fn = glue_name + "_fail.log"
    levels = [logging.ERROR, logging.WARN, logging.INFO, logging.DEBUG]
    setup_logging(console_level=levels[min(3, args.verbosity)], log_filename=args.log_fn)
    sys.excepthook = create_exc_handler(LOG.name)
    LOG.debug("Starting script with arguments: %s", " ".join(sys.argv))

    # Keep track of things going wrong to tell the user what went wrong (we want to create as much as possible)
    status_to_return = STATUS_SUCCESS

    # Compositor validation
    # XXX: Hack to make `polar2grid.sh crefl gtiff` work like legacy crefl2gtiff.sh script
    if args.subgroup_args['Frontend Swath Extraction'].get('no_compositors'):
        LOG.debug("Removing all compositors")
        args.compositors = []
    elif args.frontend == 'crefl':
        if args.backend in ['awips', 'scmi']:
            LOG.debug("Adding 'crefl_sharpen' compositor")
            args.compositors.append('crefl_sharpen' if args.backend == 'scmi' else 'crefl_sharpen_awips')
        else:
            LOG.debug("Adding 'true_color' compositor")
            args.compositors.append('true_color')
            if '--true-color' in sys.argv and 'true_color' not in args.compositors:
                LOG.debug("Adding 'true_color' compositor")
                args.compositors.append('true_color')
            if '--false-color' in sys.argv and 'false_color' not in args.compositors:
                LOG.debug("Adding 'false_color' compositor")
                args.compositors.append('false_color')

    # if "--true-color" in
    for c in args.compositors:
        if c not in compositor_manager:
            LOG.error("Compositor '%s' is unknown" % (c,))
            raise RuntimeError("Compositor '%s' is unknown" % (c,))

    # Frontend
    try:
        LOG.info("Initializing reader...")
        list_products = args.subgroup_args["Frontend Initialization"].pop("list_products")
        f = fcls(search_paths=args.data_files, **args.subgroup_args["Frontend Initialization"])
    except (ValueError, KeyError):
        LOG.debug("Frontend exception: ", exc_info=True)
        LOG.error("%s frontend failed to load and sort data files (see log for details)", args.frontend)
        return STATUS_FRONTEND_FAIL

    # Rename the log file
    if rename_log:
        rename_log_file(glue_name + f.begin_time.strftime("_%Y%m%d_%H%M%S.log"))

    if list_products:
        print("\n".join(sorted(f.available_product_names)))
        return STATUS_SUCCESS

    try:
        LOG.info("Initializing remapping...")
        remapper = Remapper(**args.subgroup_args["Remapping Initialization"])
        remap_kwargs = args.subgroup_args["Remapping"]
    except (ValueError, KeyError):
        LOG.debug("Remapping initialization exception: ", exc_info=True)
        LOG.error("Remapping initialization failed (see log for details)")
        return STATUS_REMAP_FAIL

    try:
        LOG.info("Initializing backend...")
        backend = bcls(**args.subgroup_args["Backend Initialization"])
    except (ValueError, KeyError):
        LOG.debug("Writer initialization exception: ", exc_info=True)
        LOG.error("Writer initialization failed (see log for details)")
        return STATUS_BACKEND_FAIL

    try:
        LOG.info("Initializing compositor objects...")
        compositor_objects = {}
        for c in args.compositors:
            compositor_objects[c] = compositor_manager.get_compositor(c, **args.global_kwargs)
    except (ValueError, KeyError):
        LOG.debug("Compositor initialization exception: ", exc_info=True)
        LOG.error("Compositor initialization failed (see log for details)")
        return STATUS_COMP_FAIL

    try:
        LOG.info("Extracting swaths from data files available...")
        scene = f.create_scene(**args.subgroup_args["Frontend Swath Extraction"])

        # Determine if we have a satpy scene if we should convert it to
        # a P2G Scene to continue processing
        resample_method = args.subgroup_args["Remapping"].get("remap_method")
        is_satpy_resample_method = resample_method in SATPY_RESAMPLERS
        if is_satpy_resample_method and not isinstance(scene, Scene):
            raise RuntimeError("Resampling method '{}' only supports 'satpy' readers".format(resample_method))
        elif not is_satpy_resample_method and isinstance(scene, Scene):
            # convert satpy scene to P2G Scene to be compatible with old P2G resamplers
            scene = convert_satpy_to_p2g_swath(f, scene)

        if isinstance(scene, Scene):
            if not scene.datasets:
                LOG.error("No products were returned by the frontend")
                raise RuntimeError("No products were returned by the frontend")
            if args.keep_intermediate:
                raise RuntimeError("satpy readers do not currently support saving intermediate files")
        else:
            if (isinstance(scene, Scene) and not scene.datasets) or not scene:
                LOG.error("No products were returned by the frontend")
                raise RuntimeError("No products were returned by the frontend")
            if args.keep_intermediate:
                filename = glue_name + "_swath_scene.json"
                LOG.info("Saving intermediate swath scene as '%s'", filename)
                scene.save(filename)
    except (ValueError, KeyError):
        LOG.debug("Frontend data extraction exception: ", exc_info=True)
        LOG.error("Frontend data extraction failed (see log for details)")
        return STATUS_FRONTEND_FAIL

    # What grids should we remap to (the user should tell us or the backend should have a good set of defaults)
    known_grids = backend.known_grids
    LOG.debug("Writer known grids: %r", known_grids)
    grids = remap_kwargs.pop("forced_grids", None)
    LOG.debug("Forced Grids: %r", grids)
    if resample_method == "sensor" and grids != ["sensor"]:
        LOG.error("'sensor' resampling method only supports the 'sensor' grid")
        return STATUS_GDETER_FAIL
    if not grids and not known_grids:
        # the user didn't ask for any grids and the backend doesn't have specific defaults
        LOG.error("No grids specified and no known defaults")
        return STATUS_GDETER_FAIL
    elif not grids:
        # the user didn't tell us what to do, so let's try everything the backend knows how to do
        grids = known_grids
    elif known_grids is not None:
        # the user told us what to do, let's make sure the backend can do it
        grids = list(set(grids) & set(known_grids))
        if not grids:
            LOG.error("%s backend doesn't know how to handle any of the grids specified", args.backend)
            return STATUS_GDETER_FAIL
    LOG.debug("Grids that will be mapped to: %r", grids)

    # Remap
    for grid_name in grids:
        LOG.info("Remapping to grid %s", grid_name)
        try:
            gridded_scene = remapper.remap_scene(scene, grid_name, **remap_kwargs)
            if args.keep_intermediate:
                filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                LOG.debug("saving intermediate gridded scene as '%s'", filename)
                gridded_scene.save(filename)
        except (ValueError, KeyError):
            LOG.debug("Remapping data exception: ", exc_info=True)
            LOG.error("Remapping data failed")
            status_to_return |= STATUS_REMAP_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        if not isinstance(scene, Scene):
            # Composition
            for c, comp in compositor_objects.items():
                try:
                    LOG.info("Running gridded scene through '%s' compositor", c)
                    gridded_scene = comp.modify_scene(gridded_scene, **args.subgroup_args[c + " Modification"])
                    if args.keep_intermediate:
                        filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                        LOG.debug("Updating saved intermediate gridded scene (%s) after compositor", filename)
                        gridded_scene.save(filename)
                except (KeyError, ValueError):
                    LOG.debug("Compositor Error: ", exc_info=True)
                    LOG.error("Could not properly modify scene using compositor '%s'" % (c,))
                    if args.exit_on_error:
                        raise RuntimeError("Could not properly modify scene using compositor '%s'" % (c,))

        if isinstance(f, ReaderWrapper) and not isinstance(gridded_scene, Scene):
            this_grid_definition = None
            # HACK: Create SatPy composites that were either separated before
            # resampling or needed resampling to be created
            rgbs = {}
            for product_name in gridded_scene.keys():
                rgb_name = product_name[:-6]
                # Keep track of one of the grid definitions
                if this_grid_definition is None:
                    this_grid_definition = gridded_scene[product_name]["grid_definition"]

                if product_name.endswith("rgb_0") or product_name.endswith("rgb_1") or product_name.endswith("rgb_2"):
                    if rgb_name not in rgbs:
                        rgbs[rgb_name] = [None, None, None]
                    chn_idx = int(product_name[-1])
                    rgbs[rgb_name][chn_idx] = product_name
            LOG.debug("Putting RGBs back together again")
            for rgb_name, v in rgbs.items():
                r = gridded_scene.pop(v[0])
                g = gridded_scene.pop(v[1])
                b = gridded_scene.pop(v[2])
                new_info = r.copy()
                new_info["grid_data"] = new_info["grid_data"].replace(v[0], rgb_name)
                new_info["product_name"] = rgb_name
                data = np.memmap(new_info["grid_data"], dtype=new_info["data_type"],
                                 mode="w+", shape=(3, new_info["grid_definition"]["height"], new_info["grid_definition"]["width"]))
                data[0] = r.get_data_array()[:]
                data[1] = g.get_data_array()[:]
                data[2] = b.get_data_array()[:]
                gridded_scene[rgb_name] = new_info
                del data, new_info

            # Create composites that satpy couldn't complete until after remapping
            composite_names = [x for x in f.wishlist if not isinstance(x, DatasetID)]
            if composite_names:
                tmp_scene = Scene()
                for k, v in gridded_scene.items():
                    if not isinstance(v["sensor"], set):
                        v["sensor"] = set([v["sensor"]])  # turn sensor back in to a set to match satpy usage
                    tmp_scene[v["id"]] = DataArray(v.get_data_array(), attrs=v)
                    tmp_scene[v["id"]].attrs["area"] = this_grid_definition.to_satpy_area()
                    # tmp_scene[v["id"]].info = {}
                    if v["sensor"] not in tmp_scene.attrs["sensor"]:
                        tmp_scene.attrs["sensor"].extend(v["sensor"])
                # Overwrite the wishlist that will include the above assigned datasets
                tmp_scene.wishlist = f.wishlist
                for cname in composite_names:
                    tmp_scene.compositors[cname] = tmp_scene.cpl.load_compositor(cname, tmp_scene.attrs["sensor"])
                tmp_scene.compute()
                tmp_scene.unload()
                # Add any new Datasets to our P2G Scene if SatPy created them
                for ds in tmp_scene:
                    ds_id = DatasetID.from_dict(ds.attrs)
                    if ds_id.name not in gridded_scene:
                        LOG.debug("Adding Dataset from SatPy Commpositing: %s", ds_id)
                        gridded_scene[ds_id.name] = dataarray_to_gridded_product(ds)
                        gridded_scene[ds_id.name]["grid_definition"] = this_grid_definition
                # Remove any Products from P2G Scene that SatPy decided it didn't need anymore
                for k, v in list(gridded_scene.items()):
                    if v["id"].name not in tmp_scene:
                        LOG.debug("Removing Dataset that is no longer used: %s", k)
                        del gridded_scene[k]
                del tmp_scene, v

        if isinstance(gridded_scene, Scene):
            LOG.debug("Converting satpy Scene to P2G Gridded Scene")
            # Convert it to P2G Gridded Scene
            gridded_scene = convert_satpy_to_p2g_gridded(f, gridded_scene)

        # Writer
        try:
            LOG.info("Creating output from data mapped to grid %s", grid_name)
            backend.create_output_from_scene(gridded_scene, **args.subgroup_args["Backend Output Creation"])
        except (ValueError, KeyError):
            LOG.debug("Writer output creation exception: ", exc_info=True)
            LOG.error("Writer output creation failed (see log for details)")
            status_to_return |= STATUS_BACKEND_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        LOG.info("Processing data for grid %s complete", grid_name)
        # Force deletion and eventual garbage collection of the scene objects
        del gridded_scene
    del scene
    return status_to_return
Beispiel #3
0
def main(argv=sys.argv[1:]):
    from polar2grid.core.script_utils import setup_logging, create_basic_parser, create_exc_handler, rename_log_file, ExtendAction
    from polar2grid.compositors import CompositorManager
    frontends = available_frontends()
    backends = available_backends()
    parser = create_basic_parser(
        description=
        "Extract swath data, remap it, and write it to a new file format")
    parser.add_argument(
        "frontend",
        choices=sorted(frontends.keys()),
        help=
        "Specify the swath extractor to use to read data (additional arguments are determined after this is specified)"
    )
    parser.add_argument(
        "backend",
        choices=sorted(backends.keys()),
        help=
        "Specify the backend to use to write data output (additional arguments are determined after this is specified)"
    )
    parser.add_argument(
        "--compositor-configs",
        nargs="*",
        default=None,
        help="Specify alternative configuration file(s) for compositors")
    # don't include the help flag
    argv_without_help = [x for x in argv if x not in ["-h", "--help"]]
    args, remaining_args = parser.parse_known_args(argv_without_help)
    glue_name = args.frontend + "2" + args.backend
    LOG = logging.getLogger(glue_name)

    # Load compositor information (we can't know the compositor choices until we've loaded the configuration)
    compositor_manager = CompositorManager(
        config_files=args.compositor_configs)
    # Hack: argparse doesn't let you use choices and nargs=* on a positional argument
    parser.add_argument(
        "compositors",
        choices=compositor_manager.keys() + [[]],
        nargs="*",
        help=
        "Specify the compositors to apply to the provided scene (additional arguments are determined after this is specified)"
    )

    # load the actual components we need
    farg_func = get_frontend_argument_func(frontends, args.frontend)
    fcls = get_frontend_class(frontends, args.frontend)
    barg_func = get_backend_argument_func(backends, args.backend)
    bcls = get_backend_class(backends, args.backend)

    # add_frontend_arguments(parser)
    subgroup_titles = []
    subgroup_titles += farg_func(parser)
    subgroup_titles += add_remap_argument_groups(parser)
    subgroup_titles += barg_func(parser)

    parser.add_argument(
        '-f',
        dest='data_files',
        nargs="+",
        default=[],
        action=ExtendAction,
        help="List of files or directories to extract data from")
    parser.add_argument(
        '-d',
        dest='data_files',
        nargs="+",
        default=[],
        action=ExtendAction,
        help="Data directories to look for input data files (equivalent to -f)"
    )
    global_keywords = ("keep_intermediate", "overwrite_existing",
                       "exit_on_error")
    args = parser.parse_args(argv,
                             global_keywords=global_keywords,
                             subgroup_titles=subgroup_titles)

    if not args.data_files:
        # FUTURE: When the -d flag is removed this won't be needed because -f will be required
        parser.print_usage()
        parser.exit(1, "ERROR: No data files provided (-f flag)\n")

    # Logs are renamed once data the provided start date is known
    rename_log = False
    if args.log_fn is None:
        rename_log = True
        args.log_fn = glue_name + "_fail.log"
    levels = [logging.ERROR, logging.WARN, logging.INFO, logging.DEBUG]
    setup_logging(console_level=levels[min(3, args.verbosity)],
                  log_filename=args.log_fn)
    sys.excepthook = create_exc_handler(LOG.name)
    LOG.debug("Starting script with arguments: %s", " ".join(sys.argv))

    # Keep track of things going wrong to tell the user what went wrong (we want to create as much as possible)
    status_to_return = STATUS_SUCCESS

    # Compositor validation
    # XXX: Hack to make `polar2grid.sh crefl gtiff` work like legacy crefl2gtiff.sh script
    if args.subgroup_args['Frontend Swath Extraction'].get('no_compositors'):
        LOG.debug("Removing all compositors")
        args.compositors = []
    elif args.frontend == 'crefl':
        if args.backend == 'awips':
            LOG.debug("Adding 'crefl_sharpen' compositor")
            args.compositors.append('crefl_sharpen')
        else:
            LOG.debug("Adding 'true_color' compositor")
            args.compositors.append('true_color')
            if '--true-color' in sys.argv and 'true_color' not in args.compositors:
                LOG.debug("Adding 'true_color' compositor")
                args.compositors.append('true_color')
            if '--false-color' in sys.argv and 'false_color' not in args.compositors:
                LOG.debug("Adding 'false_color' compositor")
                args.compositors.append('false_color')

    # if "--true-color" in
    for c in args.compositors:
        if c not in compositor_manager:
            LOG.error("Compositor '%s' is unknown" % (c, ))
            raise RuntimeError("Compositor '%s' is unknown" % (c, ))

    # Frontend
    try:
        LOG.info("Initializing reader...")
        list_products = args.subgroup_args["Frontend Initialization"].pop(
            "list_products")
        f = fcls(search_paths=args.data_files,
                 **args.subgroup_args["Frontend Initialization"])
    except StandardError:
        LOG.debug("Frontend exception: ", exc_info=True)
        LOG.error(
            "%s frontend failed to load and sort data files (see log for details)",
            args.frontend)
        return STATUS_FRONTEND_FAIL

    # Rename the log file
    if rename_log:
        rename_log_file(glue_name +
                        f.begin_time.strftime("_%Y%m%d_%H%M%S.log"))

    if list_products:
        print("\n".join(sorted(f.available_product_names)))
        return STATUS_SUCCESS

    try:
        LOG.info("Initializing remapping...")
        remapper = Remapper(**args.subgroup_args["Remapping Initialization"])
        remap_kwargs = args.subgroup_args["Remapping"]
    except StandardError:
        LOG.debug("Remapping initialization exception: ", exc_info=True)
        LOG.error("Remapping initialization failed (see log for details)")
        return STATUS_REMAP_FAIL

    try:
        LOG.info("Initializing backend...")
        backend = bcls(**args.subgroup_args["Backend Initialization"])
    except StandardError:
        LOG.debug("Backend initialization exception: ", exc_info=True)
        LOG.error("Backend initialization failed (see log for details)")
        return STATUS_BACKEND_FAIL

    try:
        LOG.info("Initializing compositor objects...")
        compositor_objects = {}
        for c in args.compositors:
            compositor_objects[c] = compositor_manager.get_compositor(
                c, **args.global_kwargs)
    except StandardError:
        LOG.debug("Compositor initialization exception: ", exc_info=True)
        LOG.error("Compositor initialization failed (see log for details)")
        return STATUS_COMP_FAIL

    try:
        LOG.info("Extracting swaths from data files available...")
        scene = f.create_scene(
            **args.subgroup_args["Frontend Swath Extraction"])

        # Determine if we have a satpy scene if we should convert it to
        # a P2G Scene to continue processing
        resample_method = args.subgroup_args["Remapping"].get("remap_method")
        is_satpy_resample_method = resample_method in SATPY_RESAMPLERS
        if is_satpy_resample_method and not isinstance(scene, Scene):
            raise RuntimeError(
                "Resampling method '{}' only supports 'satpy' readers".format(
                    resample_method))
        elif not is_satpy_resample_method and isinstance(scene, Scene):
            # convert satpy scene to P2G Scene to be compatible with old P2G resamplers
            scene = convert_satpy_to_p2g_swath(f, scene)

        if isinstance(scene, Scene):
            if not scene.datasets:
                LOG.error("No products were returned by the frontend")
                raise RuntimeError("No products were returned by the frontend")
            if args.keep_intermediate:
                raise RuntimeError(
                    "satpy readers do not currently support saving intermediate files"
                )
        else:
            if (isinstance(scene, Scene) and not scene.datasets) or not scene:
                LOG.error("No products were returned by the frontend")
                raise RuntimeError("No products were returned by the frontend")
            if args.keep_intermediate:
                filename = glue_name + "_swath_scene.json"
                LOG.info("Saving intermediate swath scene as '%s'", filename)
                scene.save(filename)
    except StandardError:
        LOG.debug("Frontend data extraction exception: ", exc_info=True)
        LOG.error("Frontend data extraction failed (see log for details)")
        return STATUS_FRONTEND_FAIL

    # What grids should we remap to (the user should tell us or the backend should have a good set of defaults)
    known_grids = backend.known_grids
    LOG.debug("Backend known grids: %r", known_grids)
    grids = remap_kwargs.pop("forced_grids", None)
    LOG.debug("Forced Grids: %r", grids)
    if resample_method == "sensor" and grids != ["sensor"]:
        LOG.error("'sensor' resampling method only supports the 'sensor' grid")
        return STATUS_GDETER_FAIL
    if not grids and not known_grids:
        # the user didn't ask for any grids and the backend doesn't have specific defaults
        LOG.error("No grids specified and no known defaults")
        return STATUS_GDETER_FAIL
    elif not grids:
        # the user didn't tell us what to do, so let's try everything the backend knows how to do
        grids = known_grids
    elif known_grids is not None:
        # the user told us what to do, let's make sure the backend can do it
        grids = list(set(grids) & set(known_grids))
        if not grids:
            LOG.error(
                "%s backend doesn't know how to handle any of the grids specified",
                args.backend)
            return STATUS_GDETER_FAIL
    LOG.debug("Grids that will be mapped to: %r", grids)

    # Remap
    gridded_scenes = {}
    for grid_name in grids:
        LOG.info("Remapping to grid %s", grid_name)
        try:
            gridded_scene = remapper.remap_scene(scene, grid_name,
                                                 **remap_kwargs)
            gridded_scenes[grid_name] = gridded_scene
            if args.keep_intermediate:
                filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                LOG.debug("saving intermediate gridded scene as '%s'",
                          filename)
                gridded_scene.save(filename)
        except StandardError:
            LOG.debug("Remapping data exception: ", exc_info=True)
            LOG.error("Remapping data failed")
            status_to_return |= STATUS_REMAP_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        if not isinstance(scene, Scene):
            # Composition
            for c, comp in compositor_objects.items():
                try:
                    LOG.info("Running gridded scene through '%s' compositor",
                             c)
                    gridded_scene = comp.modify_scene(
                        gridded_scene,
                        **args.subgroup_args[c + " Modification"])
                    if args.keep_intermediate:
                        filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                        LOG.debug(
                            "Updating saved intermediate gridded scene (%s) after compositor",
                            filename)
                        gridded_scene.save(filename)
                except StandardError:
                    LOG.debug("Compositor Error: ", exc_info=True)
                    LOG.error(
                        "Could not properly modify scene using compositor '%s'"
                        % (c, ))
                    if args.exit_on_error:
                        raise RuntimeError(
                            "Could not properly modify scene using compositor '%s'"
                            % (c, ))

        if isinstance(f,
                      ReaderWrapper) and not isinstance(gridded_scene, Scene):
            this_grid_definition = None
            # HACK: Create SatPy composites that were either separated before
            # resampling or needed resampling to be created
            rgbs = {}
            for product_name in gridded_scene.keys():
                rgb_name = product_name[:-6]
                # Keep track of one of the grid definitions
                if this_grid_definition is None:
                    this_grid_definition = gridded_scene[product_name][
                        "grid_definition"]

                if product_name.endswith("rgb_0") or product_name.endswith(
                        "rgb_1") or product_name.endswith("rgb_2"):
                    if rgb_name not in rgbs:
                        rgbs[rgb_name] = [None, None, None]
                    chn_idx = int(product_name[-1])
                    rgbs[rgb_name][chn_idx] = product_name
            LOG.debug("Putting RGBs back together again")
            for rgb_name, v in rgbs.items():
                r = gridded_scene.pop(v[0])
                g = gridded_scene.pop(v[1])
                b = gridded_scene.pop(v[2])
                new_info = r.copy()
                new_info["grid_data"] = new_info["grid_data"].replace(
                    v[0], rgb_name)
                new_info["product_name"] = rgb_name
                data = np.memmap(new_info["grid_data"],
                                 dtype=new_info["data_type"],
                                 mode="w+",
                                 shape=(3,
                                        new_info["grid_definition"]["height"],
                                        new_info["grid_definition"]["width"]))
                data[0] = r.get_data_array()[:]
                data[1] = g.get_data_array()[:]
                data[2] = b.get_data_array()[:]
                gridded_scene[rgb_name] = new_info

            # Create composites that satpy couldn't complete until after remapping
            composite_names = [
                x for x in f.wishlist if not isinstance(x, DatasetID)
            ]
            if composite_names:
                tmp_scene = Scene()
                for k, v in gridded_scene.items():
                    if not isinstance(v["sensor"], set):
                        v["sensor"] = set([
                            v["sensor"]
                        ])  # turn sensor back in to a set to match satpy usage
                    tmp_scene[v["id"]] = Dataset(v.get_data_array(), **v)
                    tmp_scene[v["id"]].info[
                        "area"] = this_grid_definition.to_satpy_area()
                    # tmp_scene[v["id"]].info = {}
                    if v["sensor"] not in tmp_scene.info["sensor"]:
                        tmp_scene.info["sensor"].extend(v["sensor"])
                # Overwrite the wishlist that will include the above assigned datasets
                tmp_scene.wishlist = f.wishlist
                for cname in composite_names:
                    tmp_scene.compositors[
                        cname] = tmp_scene.cpl.load_compositor(
                            cname, tmp_scene.info["sensor"])
                tmp_scene.compute()
                tmp_scene.unload()
                # Add any new Datasets to our P2G Scene if SatPy created them
                for ds in tmp_scene:
                    if ds.info["id"].name not in gridded_scene:
                        LOG.debug("Adding Dataset from SatPy Commpositing: %s",
                                  ds.info["id"])
                        gridded_scene[ds.info["id"].
                                      name] = dataset_to_gridded_product(ds)
                        gridded_scene[ds.info["id"].name][
                            "grid_definition"] = this_grid_definition
                # Remove any Products from P2G Scene that SatPy decided it didn't need anymore
                for k, v in list(gridded_scene.items()):
                    if v["id"].name not in tmp_scene:
                        LOG.debug(
                            "Removing Dataset that is no longer used: %s", k)
                        del gridded_scene[k]

        if isinstance(gridded_scene, Scene):
            LOG.debug("Converting satpy Scene to P2G Gridded Scene")
            # Convert it to P2G Gridded Scene
            gridded_scene = convert_satpy_to_p2g_gridded(f, gridded_scene)

        # Backend
        try:
            LOG.info("Creating output from data mapped to grid %s", grid_name)
            backend.create_output_from_scene(
                gridded_scene, **args.subgroup_args["Backend Output Creation"])
        except StandardError:
            LOG.debug("Backend output creation exception: ", exc_info=True)
            LOG.error("Backend output creation failed (see log for details)")
            status_to_return |= STATUS_BACKEND_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        LOG.info("Processing data for grid %s complete", grid_name)

    return status_to_return
Beispiel #4
0
def main(argv=sys.argv[1:]):
    from polar2grid.core.script_utils import setup_logging, create_basic_parser, create_exc_handler, rename_log_file, ExtendAction
    from polar2grid.compositors import CompositorManager
    frontends = available_frontends()
    backends = available_backends()
    parser = create_basic_parser(
        description=
        "Extract swath data, remap it, and write it to a new file format")
    parser.add_argument(
        "frontend",
        choices=sorted(frontends.keys()),
        help=
        "Specify the swath extractor to use to read data (additional arguments are determined after this is specified)"
    )
    parser.add_argument(
        "backend",
        choices=sorted(backends.keys()),
        help=
        "Specify the backend to use to write data output (additional arguments are determined after this is specified)"
    )
    parser.add_argument(
        "--compositor-configs",
        nargs="*",
        default=None,
        help="Specify alternative configuration file(s) for compositors")
    # don't include the help flag
    argv_without_help = [x for x in argv if x not in ["-h", "--help"]]
    args, remaining_args = parser.parse_known_args(argv_without_help)
    glue_name = args.frontend + "2" + args.backend
    LOG = logging.getLogger(glue_name)

    # Load compositor information (we can't know the compositor choices until we've loaded the configuration)
    compositor_manager = CompositorManager(
        config_files=args.compositor_configs)
    # Hack: argparse doesn't let you use choices and nargs=* on a positional argument
    parser.add_argument(
        "compositors",
        choices=compositor_manager.keys() + [[]],
        nargs="*",
        help=
        "Specify the compositors to apply to the provided scene (additional arguments are determined after this is specified)"
    )

    # load the actual components we need
    farg_func = get_frontend_argument_func(frontends, args.frontend)
    fcls = get_frontend_class(frontends, args.frontend)
    barg_func = get_backend_argument_func(backends, args.backend)
    bcls = get_backend_class(backends, args.backend)

    # add_frontend_arguments(parser)
    subgroup_titles = []
    subgroup_titles += farg_func(parser)
    subgroup_titles += add_remap_argument_groups(parser)
    subgroup_titles += barg_func(parser)

    parser.add_argument(
        '-f',
        dest='data_files',
        nargs="+",
        default=[],
        action=ExtendAction,
        help="List of files or directories to extract data from")
    parser.add_argument(
        '-d',
        dest='data_files',
        nargs="+",
        default=[],
        action=ExtendAction,
        help="Data directories to look for input data files (equivalent to -f)"
    )
    global_keywords = ("keep_intermediate", "overwrite_existing",
                       "exit_on_error")
    args = parser.parse_args(argv,
                             global_keywords=global_keywords,
                             subgroup_titles=subgroup_titles)

    if not args.data_files:
        # FUTURE: When the -d flag is removed this won't be needed because -f will be required
        parser.print_usage()
        parser.exit(1, "ERROR: No data files provided (-f flag)\n")

    # Logs are renamed once data the provided start date is known
    rename_log = False
    if args.log_fn is None:
        rename_log = True
        args.log_fn = glue_name + "_fail.log"
    levels = [logging.ERROR, logging.WARN, logging.INFO, logging.DEBUG]
    setup_logging(console_level=levels[min(3, args.verbosity)],
                  log_filename=args.log_fn)
    sys.excepthook = create_exc_handler(LOG.name)
    LOG.debug("Starting script with arguments: %s", " ".join(sys.argv))

    # Keep track of things going wrong to tell the user what went wrong (we want to create as much as possible)
    status_to_return = STATUS_SUCCESS

    # Compositor validation
    for c in args.compositors:
        if c not in compositor_manager:
            LOG.error("Compositor '%s' is unknown" % (c, ))
            raise RuntimeError("Compositor '%s' is unknown" % (c, ))

    # Frontend
    try:
        LOG.info("Initializing swath extractor...")
        list_products = args.subgroup_args["Frontend Initialization"].pop(
            "list_products")
        f = fcls(search_paths=args.data_files,
                 **args.subgroup_args["Frontend Initialization"])
    except StandardError:
        LOG.debug("Frontend exception: ", exc_info=True)
        LOG.error(
            "%s frontend failed to load and sort data files (see log for details)",
            args.frontend)
        return STATUS_FRONTEND_FAIL

    # Rename the log file
    if rename_log:
        rename_log_file(glue_name +
                        f.begin_time.strftime("_%Y%m%d_%H%M%S.log"))

    if list_products:
        print("\n".join(sorted(f.available_product_names)))
        return STATUS_SUCCESS

    try:
        LOG.info("Initializing remapping...")
        remapper = Remapper(**args.subgroup_args["Remapping Initialization"])
        remap_kwargs = args.subgroup_args["Remapping"]
    except StandardError:
        LOG.debug("Remapping initialization exception: ", exc_info=True)
        LOG.error("Remapping initialization failed (see log for details)")
        return STATUS_REMAP_FAIL

    try:
        LOG.info("Initializing backend...")
        backend = bcls(**args.subgroup_args["Backend Initialization"])
    except StandardError:
        LOG.debug("Backend initialization exception: ", exc_info=True)
        LOG.error("Backend initialization failed (see log for details)")
        return STATUS_BACKEND_FAIL

    try:
        LOG.info("Initializing compositor objects...")
        compositor_objects = {}
        for c in args.compositors:
            compositor_objects[c] = compositor_manager.get_compositor(
                c, **args.global_kwargs)
    except StandardError:
        LOG.debug("Compositor initialization exception: ", exc_info=True)
        LOG.error("Compositor initialization failed (see log for details)")
        return STATUS_COMP_FAIL

    try:
        LOG.info("Extracting swaths from data files available...")
        scene = f.create_scene(
            **args.subgroup_args["Frontend Swath Extraction"])
        if not scene:
            LOG.error("No products were returned by the frontend")
            raise RuntimeError("No products were returned by the frontend")
        if args.keep_intermediate:
            filename = glue_name + "_swath_scene.json"
            LOG.info("Saving intermediate swath scene as '%s'", filename)
            scene.save(filename)
    except StandardError:
        LOG.debug("Frontend data extraction exception: ", exc_info=True)
        LOG.error("Frontend data extraction failed (see log for details)")
        return STATUS_FRONTEND_FAIL

    # What grids should we remap to (the user should tell us or the backend should have a good set of defaults)
    known_grids = backend.known_grids
    LOG.debug("Backend known grids: %r", known_grids)
    grids = remap_kwargs.pop("forced_grids", None)
    LOG.debug("Forced Grids: %r", grids)
    if not grids and not known_grids:
        # the user didn't ask for any grids and the backend doesn't have specific defaults
        LOG.error("No grids specified and no known defaults")
        return STATUS_GDETER_FAIL
    elif not grids:
        # the user didn't tell us what to do, so let's try everything the backend knows how to do
        grids = known_grids
    elif known_grids is not None:
        # the user told us what to do, let's make sure the backend can do it
        grids = list(set(grids) & set(known_grids))
        if not grids:
            LOG.error(
                "%s backend doesn't know how to handle any of the grids specified",
                args.backend)
            return STATUS_GDETER_FAIL
    LOG.debug("Grids that will be mapped to: %r", grids)

    # Remap
    gridded_scenes = {}
    for grid_name in grids:
        try:
            LOG.info("Remapping to grid %s", grid_name)
            gridded_scene = remapper.remap_scene(scene, grid_name,
                                                 **remap_kwargs)
            gridded_scenes[grid_name] = gridded_scene
            if args.keep_intermediate:
                filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                LOG.debug("saving intermediate gridded scene as '%s'",
                          filename)
                gridded_scene.save(filename)
        except StandardError:
            LOG.debug("Remapping data exception: ", exc_info=True)
            LOG.error("Remapping data failed")
            status_to_return |= STATUS_REMAP_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        # Composition
        for c, comp in compositor_objects.items():
            try:
                LOG.info("Running gridded scene through '%s' compositor", c)
                gridded_scene = comp.modify_scene(
                    gridded_scene, **args.subgroup_args[c + " Modification"])
                if args.keep_intermediate:
                    filename = glue_name + "_gridded_scene_" + grid_name + ".json"
                    LOG.debug(
                        "Updating saved intermediate gridded scene (%s) after compositor",
                        filename)
                    gridded_scene.save(filename)
            except StandardError:
                LOG.debug("Compositor Error: ", exc_info=True)
                LOG.error(
                    "Could not properly modify scene using compositor '%s'" %
                    (c, ))
                if args.exit_on_error:
                    raise RuntimeError(
                        "Could not properly modify scene using compositor '%s'"
                        % (c, ))

        # Backend
        try:
            LOG.info("Creating output from data mapped to grid %s", grid_name)
            backend.create_output_from_scene(
                gridded_scene, **args.subgroup_args["Backend Output Creation"])
        except StandardError:
            LOG.debug("Backend output creation exception: ", exc_info=True)
            LOG.error("Backend output creation failed (see log for details)")
            status_to_return |= STATUS_BACKEND_FAIL
            if args.exit_on_error:
                return status_to_return
            continue

        LOG.info("Processing data for grid %s complete", grid_name)

    return status_to_return