def smpl_var_phased():
return pc.Variant(
'chr1',100,'SNP1',
'A','C',
qual=100,fltr='PASS',
info='.',fmt='GT:GQ',
genos=['0|0:42','0|1:42','1|1:42']
)
def missing_var():
return pc.Variant(
'chr1',100,'SNP1',
'A','C',
qual=100,fltr='PASS',
info='.',fmt='GT:GQ',
genos=['./.:42','./.:42','1/1:42']
)
def test_subtraction():
assert pc.Variant('chr1',1000,'SNP1','A','C') - pc.Variant('chr1',1500,'SNP2','T','G') == 500