def _setup(self) -> None:
if population.count() == 0:
while population.count() < seq.minimum_bounding_n(
config.P_VALUE / max(1, population.count())):
self._logger.info("Создается базовый организм:")
org = population.create_new_organism()
self._logger.info(f"{org}\n")
self._scale = int(population.count()**0.5)
def test_get_oldest():
org = population.create_new_organism()
org._doc.wins = 1
org.save()
org = population.create_new_organism()
org._doc.wins = 2
org.save()
organisms = population.get_all()
assert isinstance(organisms, Iterable)
organisms = list(organisms)
for organism in organisms:
assert isinstance(organism, population.Organism)
assert len(list(organisms)) == 6
def set_test_collection():
# noinspection PyProtectedMember
saved_collection = store._COLLECTION
test_collection = saved_collection.database["test"]
store._COLLECTION = test_collection
org = population.create_new_organism()
org.evaluate_fitness(("TGKBP", "TRNFP"), pd.Timestamp("2020-05-23"))
org = population.create_new_organism()
org.evaluate_fitness(("TGKBP", "TRNFP"), pd.Timestamp("2020-05-23"))
org = population.create_new_organism()
org.evaluate_fitness(("TGKBP", "TRNFP"), pd.Timestamp("2020-05-22"))
org = population.create_new_organism()
org.evaluate_fitness(("AKRN", "TRNFP"), pd.Timestamp("2020-05-23"))
yield
store._COLLECTION = saved_collection
test_collection.drop()
def get_model_doc():
# noinspection PyProtectedMember
saved_collection = store._COLLECTION
test_collection = saved_collection.database["test"]
store._COLLECTION = test_collection
org = population.create_new_organism()
org.evaluate_fitness(("KRKNP", "NMTP", "TATNP"), pd.Timestamp("2020-05-23"))
yield org
store._COLLECTION = saved_collection
test_collection.drop()
def _setup(self) -> NoReturn:
"""Создает популяцию из организмов по умолчанию.
Если организмов меньше 4 - минимальное количество для осуществления эволюции.
"""
count = population.count()
print(f"Имеется {count} организмов из {self._max_population}")
print()
if count < 4:
for i in range(1, self._max_population - count + 1):
print(f"Создаю базовые генотипы - {i}/{self._max_population - count}")
organism = population.create_new_organism()
print(organism)
print()
def test_create_new_organism():
org = population.create_new_organism()
assert isinstance(org, population.Organism)
assert population.Organism(_id=org.id).id == org.id
org.die()
