def delete_user(username):
prefix = "Delete existing user: "******"no such user:"******"deleted")
def create_user(username, email, password, roles):
if password is None:
password = input_password(username)
prefix = "Modified existing user: "******"Created new user: "
acc = Account(id=username, email=email)
acc.set_email(email)
acc.set_role(roles)
acc.set_password(password)
acc.save()
print(prefix + username)
def send_editor_email(journal):
editor = Account.pull(journal.editor)
eg = EditorGroup.pull_by_key("name", journal.editor_group)
url_root = app.config.get("BASE_URL")
to = [editor.email]
fro = app.config.get('SYSTEM_EMAIL_FROM', '*****@*****.**')
subject = app.config.get("SERVICE_NAME","") + " - new journal assigned to you"
app_email.send_mail(to=to,
fro=fro,
subject=subject,
template_name="email/journal_assigned_editor.txt",
editor=editor.id.encode('utf-8', 'replace'),
journal_name=journal.bibjson().title.encode('utf-8', 'replace'),
group_name=eg.name.encode("utf-8", "replace"),
url_root=url_root
)
def send_editor_email(journal):
editor = Account.pull(journal.editor)
eg = EditorGroup.pull_by_key("name", journal.editor_group)
url_root = app.config.get("BASE_URL")
to = [editor.email]
fro = app.config.get('SYSTEM_EMAIL_FROM', '*****@*****.**')
subject = app.config.get("SERVICE_NAME",
"") + " - new journal assigned to you"
app_email.send_mail(to=to,
fro=fro,
subject=subject,
template_name="email/journal_assigned_editor.txt",
editor=editor.id.encode('utf-8', 'replace'),
journal_name=journal.bibjson().title.encode(
'utf-8', 'replace'),
group_name=eg.name.encode("utf-8", "replace"),
url_root=url_root)
def journals_applications_provenance(outfile_applications, outfile_accounts,
outfile_reapps, conn):
with codecs.open(outfile_applications, "wb", "utf-8") as f, codecs.open(
outfile_accounts, "wb",
"utf-8") as g, codecs.open(outfile_reapps, "wb", "utf-8") as h:
out_applications = csv.writer(f)
out_applications.writerow([
"Journal ID", "Journal Created", "Journal Reapplied",
"Application ID", "Application Last Updated", "Application Status",
"Published Diff", "Latest Edit Recorded",
"Latest Accepted Recorded"
])
out_accounts = csv.writer(g)
out_accounts.writerow([
"Journal ID", "Journal Created", "Journal Reapplied", "In DOAJ",
"Missing Account ID"
])
out_reapps = csv.writer(h)
out_reapps.writerow([
"Journal ID", "Journal Created", "Journal Reapplied",
"Application ID", "Application Created",
"Application Last Updated", "Application Last Manual Update",
"Application Status", "Published Diff"
])
counter = 0
for result in esprit.tasks.scroll(conn, "journal", keepalive="45m"):
counter += 1
journal = Journal(**result)
print counter, journal.id
# first figure out if there is a broken related application
issns = journal.bibjson().issns()
applications = Suggestion.find_by_issn(issns)
latest = None
for application in applications:
if latest is None:
latest = application
if application.last_updated_timestamp > latest.last_updated_timestamp:
latest = application
if latest is None:
continue
jcreated = journal.created_timestamp
reapp = journal.last_update_request
print counter, journal.id, reapp
if reapp is not None:
jcreated = datetime.strptime(reapp, "%Y-%m-%dT%H:%M:%SZ")
jcreated = adjust_timestamp(jcreated, JOURNAL_TIMEZONE_CUTOFF)
app_lustamp = adjust_timestamp(latest.last_updated_timestamp,
APP_TIMEZONE_CUTOFF)
# app_man_lustamp = latest.last_manual_update_timestamp # no need to adjust this one
app_man_lustamp = adjust_timestamp(
latest.last_manual_update_timestamp, APP_TIMEZONE_CUTOFF)
td = jcreated - app_lustamp
mtd = jcreated - app_man_lustamp
diff = td.total_seconds()
mdiff = mtd.total_seconds()
# was the journal created after the application by greater than the threshold?
if diff > THRESHOLD:
last_edit = ""
last_accept = ""
edit_query = deepcopy(PROV_QUERY)
edit_query["query"]["bool"]["must"][0]["term"][
"resource_id.exact"] = latest.id
edit_query["query"]["bool"]["must"][1]["term"][
"action.exact"] = "edit"
provs = Provenance.q2obj(q=edit_query)
if len(provs) > 0:
last_edit = provs[0].last_updated
accept_query = deepcopy(PROV_QUERY)
accept_query["query"]["bool"]["must"][0]["term"][
"resource_id.exact"] = latest.id
accept_query["query"]["bool"]["must"][1]["term"][
"action.exact"] = "status:accepted"
provs = Provenance.q2obj(q=accept_query)
if len(provs) > 0:
last_accept = provs[0].last_updated
out_applications.writerow([
journal.id, journal.created_date,
journal.last_update_request, latest.id,
latest.last_updated, latest.application_status, diff,
last_edit, last_accept
])
# was the journal (in doaj) created before the application by greater than the threshold, and is it in a state other than rejected
if mdiff < -1 * THRESHOLD and latest.application_status != constants.APPLICATION_STATUS_REJECTED and journal.is_in_doaj(
):
out_reapps.writerow([
journal.id, journal.created_date,
journal.last_update_request, latest.id,
latest.created_date, latest.last_updated,
latest.last_manual_update, latest.application_status, mdiff
])
# now figure out if the account is missing
owner = journal.owner
if owner is None:
out_accounts.writerow([
journal.id, journal.created_date,
journal.last_update_request,
str(journal.is_in_doaj()), "NO OWNER"
])
else:
acc = Account.pull(owner)
if acc is None:
out_accounts.writerow([
journal.id, journal.created_date,
journal.last_update_request,
str(journal.is_in_doaj()), owner
])
print "processed", counter, "journals"
def get_associate_accounts(self):
accs = []
for a in self.associates:
acc = Account.pull(a)
accs.append(acc)
return accs
def get_editor_account(self):
return Account.pull(self.editor)
def get_associate_accounts(self):
accs = []
for a in self.associates:
acc = Account.pull(a)
accs.append(acc)
return accs
def get_editor_account(self):
return Account.pull(self.editor)
from portality.models import Account
if __name__ == "__main__":
import argparse, getpass
parser = argparse.ArgumentParser()
parser.add_argument("-e", "--email", help="email address of user to make admin")
args = parser.parse_args()
if not args.email:
print "Please specify an email with the -e option"
exit()
email = args.email
acc = Account.pull(email)
if not acc:
print "Account with email " + email + " does not exist"
current_roles = acc.role
if "admin" not in current_roles:
acc.set_role(current_roles + ["admin"])
acc.save()
"--password",
help="password for the new or existing user. If omitted, you will be prompted for one on the next line",
)
parser.add_argument("-r", "--role", help="comma separated list of roles to be held by this account")
args = parser.parse_args()
if not args.username:
print "Please specify a username with the -u option"
exit()
if not args.role:
print "WARNING: no role specified, so this user won't be able to do anything"
username = args.username
email = args.email
password = None
roles = [r.strip() for r in args.role.split(",")] if args.role is not None else []
if args.password:
password = args.password
else:
password = input_password()
acc = Account.pull(username)
if not acc:
acc = Account({"id": username, "email": email})
acc.set_role(roles)
acc.set_password(password)
acc.save()
def create_account_on_suggestion_approval(suggestion, journal):
o = Account.pull(suggestion.owner)
if o:
flash('Account {username} already exists, so simply associating the new journal with it.'.format(username=o.id), 'success')
o.add_journal(journal.id)
if not o.has_role('publisher'):
o.add_role('publisher')
o.save()
return o
suggestion_contact = util.listpop(suggestion.contacts())
if not suggestion_contact.get('email'):
msg = ERROR_MSG_TEMPLATE.format(username=o.id, missing_thing='journal contact email in the application')
app.logger.error(msg)
flash(msg)
return o
send_info_to = suggestion_contact.get('email')
o = Account.make_account(
suggestion.owner,
name=suggestion_contact.get('name'),
email=send_info_to,
roles=['publisher'],
associated_journal_ids=[journal.id]
)
o.save()
url_root = request.url_root
if url_root.endswith("/"):
url_root = url_root[:-1]
if not o.reset_token:
msg = ERROR_MSG_TEMPLATE.format(username=o.id, missing_thing='reset token')
app.logger.error(msg)
flash(msg)
return o
reset_url = url_root + url_for('account.reset', reset_token=o.reset_token)
forgot_pw_url = url_root + url_for('account.forgot')
password_create_timeout_seconds = int(app.config.get("PASSWORD_CREATE_TIMEOUT", app.config.get('PASSWORD_RESET_TIMEOUT', 86400) * 14))
password_create_timeout_days = password_create_timeout_seconds / (60*60*24)
to = [send_info_to]
fro = app.config.get('SYSTEM_EMAIL_FROM', '*****@*****.**')
subject = app.config.get("SERVICE_NAME","") + " - account created"
try:
if app.config.get("ENABLE_PUBLISHER_EMAIL", False):
app_email.send_mail(to=to,
fro=fro,
subject=subject,
template_name="email/account_created.txt",
reset_url=reset_url,
username=o.id,
timeout_days=password_create_timeout_days,
forgot_pw_url=forgot_pw_url
)
flash('Sent email to ' + send_info_to + ' to tell them about the new account.', 'success')
else:
flash('Did not email to ' + send_info_to + ' to tell them about the new account, as publisher emailing is disabled.', 'error')
if app.config.get('DEBUG',False):
util.flash_with_url('Debug mode - url for create is <a href="{url}">{url}</a>'.format(url=reset_url))
except Exception as e:
magic = str(uuid.uuid1())
util.flash_with_url('Hm, sending the account creation email didn\'t work. Please quote this magic number when reporting the issue: ' + magic + ' . Thank you!', 'error')
if app.config.get('DEBUG',False):
util.flash_with_url('Debug mode - url for create is <a href="{url}">{url}</a>'.format(url=reset_url))
app.logger.error(magic + "\n" + repr(e))
raise e
flash('Account {username} created'.format(username=o.id), 'success')
return o
"-r",
"--role",
help="comma separated list of roles to be held by this account")
args = parser.parse_args()
if not args.username:
print "Please specify a username with the -u option"
exit()
if not args.role:
print "WARNING: no role specified, so this user won't be able to do anything"
username = args.username
email = args.email
password = None
roles = [r.strip()
for r in args.role.split(",")] if args.role is not None else []
if args.password:
password = args.password
else:
password = input_password()
acc = Account.pull(username)
if not acc:
acc = Account(id=username, email=email)
acc.set_role(roles)
acc.set_password(password)
acc.save()
def journals_applications_provenance(outfile_applications, outfile_accounts, outfile_reapps, conn):
with codecs.open(outfile_applications, "wb", "utf-8") as f, codecs.open(outfile_accounts, "wb", "utf-8") as g, codecs.open(outfile_reapps, "wb", "utf-8") as h:
out_applications = csv.writer(f)
out_applications.writerow(["Journal ID", "Journal Created", "Journal Reapplied", "Application ID", "Application Last Updated", "Application Status", "Published Diff", "Latest Edit Recorded", "Latest Accepted Recorded"])
out_accounts = csv.writer(g)
out_accounts.writerow(["Journal ID", "Journal Created", "Journal Reapplied", "In DOAJ", "Missing Account ID"])
out_reapps = csv.writer(h)
out_reapps.writerow(["Journal ID", "Journal Created", "Journal Reapplied", "Application ID", "Application Created", "Application Last Updated", "Application Last Manual Update", "Application Status", "Published Diff"])
counter = 0
for result in esprit.tasks.scroll(conn, "journal", keepalive="45m"):
counter += 1
journal = Journal(**result)
print counter, journal.id
# first figure out if there is a broken related application
issns = journal.bibjson().issns()
applications = Suggestion.find_by_issn(issns)
latest = None
for application in applications:
if latest is None:
latest = application
if application.last_updated_timestamp > latest.last_updated_timestamp:
latest = application
if latest is None:
continue
jcreated = journal.created_timestamp
reapp = journal.last_update_request
print counter, journal.id, reapp
if reapp is not None:
jcreated = datetime.strptime(reapp, "%Y-%m-%dT%H:%M:%SZ")
jcreated = adjust_timestamp(jcreated, JOURNAL_TIMEZONE_CUTOFF)
app_lustamp = adjust_timestamp(latest.last_updated_timestamp, APP_TIMEZONE_CUTOFF)
# app_man_lustamp = latest.last_manual_update_timestamp # no need to adjust this one
app_man_lustamp = adjust_timestamp(latest.last_manual_update_timestamp, APP_TIMEZONE_CUTOFF)
td = jcreated - app_lustamp
mtd = jcreated - app_man_lustamp
diff = td.total_seconds()
mdiff = mtd.total_seconds()
# was the journal created after the application by greater than the threshold?
if diff > THRESHOLD:
last_edit = ""
last_accept = ""
edit_query = deepcopy(PROV_QUERY)
edit_query["query"]["bool"]["must"][0]["term"]["resource_id.exact"] = latest.id
edit_query["query"]["bool"]["must"][1]["term"]["action.exact"] = "edit"
provs = Provenance.q2obj(q=edit_query)
if len(provs) > 0:
last_edit = provs[0].last_updated
accept_query = deepcopy(PROV_QUERY)
accept_query["query"]["bool"]["must"][0]["term"]["resource_id.exact"] = latest.id
accept_query["query"]["bool"]["must"][1]["term"]["action.exact"] = "status:accepted"
provs = Provenance.q2obj(q=accept_query)
if len(provs) > 0:
last_accept = provs[0].last_updated
out_applications.writerow([journal.id, journal.created_date, journal.last_update_request, latest.id, latest.last_updated, latest.application_status, diff, last_edit, last_accept])
# was the journal (in doaj) created before the application by greater than the threshold, and is it in a state other than rejected
if mdiff < -1 * THRESHOLD and latest.application_status != constants.APPLICATION_STATUS_REJECTED and journal.is_in_doaj():
out_reapps.writerow([journal.id, journal.created_date, journal.last_update_request, latest.id, latest.created_date, latest.last_updated, latest.last_manual_update, latest.application_status, mdiff])
# now figure out if the account is missing
owner = journal.owner
if owner is None:
out_accounts.writerow([journal.id, journal.created_date, journal.last_update_request, str(journal.is_in_doaj()), "NO OWNER"])
else:
acc = Account.pull(owner)
if acc is None:
out_accounts.writerow([journal.id, journal.created_date, journal.last_update_request, str(journal.is_in_doaj()), owner])
print "processed", counter, "journals"
