raise ValueError('{0:s} is not an editable flag or a valid '
'keyword'.format(repr(key)))
else:
type_ = type(flagDefinition(key))
if type(val) != type_:
raise TypeError('expected {0:s} as type of new definition, '
'found {1:s}'.format(repr(type_.__name__),
repr(type(val).__name__)))
editor(key, val)
else:
alist = list(DEFINITIONS)
alist.sort()
return alist
flagDefinition.__doc__ = flagDefinition.__doc__.format(
editable=wrapText(joinTerms(flagDefinition(editable=True), last=', and '),
subsequent_indent=' '*4))
def addNonstdAminoacid(resname, *properties):
"""Add non-standard amino acid *resname* with *properties* selected from:
* {props}
>>> addNonstdAminoacid('PTR', 'acidic', 'aromatic', 'cyclic', 'large',
... 'polar', 'surface')
Default set of non-standard amino acids can be restored as follows:
>>> flagDefinition(reset='nonstdaa')"""
'keyword'.format(repr(key)))
else:
type_ = type(flagDefinition(key))
if type(val) != type_:
raise TypeError('expected {0} as type of new definition, '
'found {1}'.format(repr(type_.__name__),
repr(type(val).__name__)))
editor(key, val)
else:
alist = list(DEFINITIONS)
alist.sort()
return alist
flagDefinition.__doc__ = flagDefinition.__doc__.format(
editable=wrapText(joinTerms(flagDefinition(editable=True), last=', and '),
subsequent_indent=' ' * 4))
def addNonstdAminoacid(resname, *properties):
"""Add non-standard amino acid *resname* with *properties* selected from:
* {props}
.. ipython:: python
addNonstdAminoacid('PTR', 'acidic', 'aromatic', 'cyclic', 'large',
'polar', 'surface')
Default set of non-standard amino acids can be restored as follows: