def test_2g_with_bad_file(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1ax.dat'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, "bad mag file")
def test_2g_with_bad_file(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1ax.dat'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, "bad mag file")
def test_2g_fail_option6(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '6'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, 'Naming convention option [6] not currently supported')
def test_2g_succeed_option7(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '7-3'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'measurements.txt')
def test_2g_fail_option7(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '7'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, 'option [7] must be in form 7-Z where Z is an integer')
def test_2g_succeed_option7(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '7-3'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'measurements.txt')
def test_2g_with_files(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'measurements.txt')
self.assertTrue(os.path.isfile(outfile))
meas_df = nb.MagicDataFrame(outfile)
self.assertIn('sequence', meas_df.df.columns)
def test_2g_fail_option6(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '6'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(
error_message,
'Naming convention option [6] not currently supported')
def test_2g_fail_option7(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['samp_con'] = '7'
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(
error_message,
'option [7] must be in form 7-Z where Z is an integer')
def test_2g_with_files(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'measurements.txt')
self.assertTrue(os.path.isfile(outfile))
meas_df = nb.MagicDataFrame(outfile)
self.assertIn('sequence', meas_df.df.columns)
def test_2g_with_path(self):
options = {}
input_dir = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
#options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
# '2G_bin_magic', 'mn1')
options['mag_file'] = os.path.join(input_dir, 'mn001-1a.dat')
options['meas_file'] = os.path.join(input_dir, 'mn001-1a.magic')
options['spec_file'] = os.path.join('data_files', 'custom_specimens.txt')
options['dir_path'] = 'data_files'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertEqual(outfile, options['meas_file'])
def test_2g_with_path(self):
options = {}
input_dir = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
#options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
# '2G_bin_magic', 'mn1')
options['mag_file'] = os.path.join(input_dir, 'mn001-1a.dat')
options['meas_file'] = os.path.join(input_dir, 'mn001-1a.magic')
options['spec_file'] = os.path.join('data_files',
'custom_specimens.txt')
options['dir_path'] = 'data_files'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertEqual(outfile, options['meas_file'])
def test_2g_with_options(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['meas_file'] = 'mn001-1a.magic'
options['samp_con'] = '4-3'
options['inst'] = 'instrument'
options['noave'] = 0
options['specnum'] = 2
options['location_name'] = 'location'
options['or_con'] = '4'
options['gmeths'] = 'FS-LOC-MAP:SO-POM'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'mn001-1a.magic')
def test_2g_with_options(self):
options = {}
options['ID'] = os.path.join(WD, 'data_files', 'Measurement_Import',
'2G_bin_magic', 'mn1')
options['mag_file'] = 'mn001-1a.dat'
options['meas_file'] = 'mn001-1a.magic'
options['samp_con'] = '4-3'
options['inst'] = 'instrument'
options['noave'] = 0
options['specnum'] = 2
options['location_name'] = 'location'
options['or_con'] = '4'
options['gmeths'] = 'FS-LOC-MAP:SO-POM'
program_ran, outfile = _2g_bin_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.split(outfile)[1], 'mn001-1a.magic')
def test_2g_with_no_files(self):
options = {}
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, 'mag file is required input')
def test_2g_with_no_files(self):
options = {}
program_ran, error_message = _2g_bin_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, 'mag file is required input')