def diff(diff: DiffModel, document: provo.ProvDocument):
print_msg(" Exporting module dependency comparison")
added, removed, replaced = diff.modules
for module in added: # type: Module
_create_module_dep(module, document, suffix="_a")
document.wasGeneratedBy("module{}_a".format(module.id),
"trial{}Execution".format(diff.trial2.id), None,
"module{}AddDep".format(module.id),
[(provo.PROV_ROLE, "dependencyAddition")])
for module in removed: # type: Module
_create_module_dep(module, document, suffix="_r")
document.wasInvalidatedBy("module{}_r".format(module.id),
"trial{}Execution".format(diff.trial2.id), None,
"module{}RemoveDep".format(module.id),
[(provo.PROV_ROLE, "dependencyRemoval")])
for (mod_removed, mod_added) in replaced: # type: Module
_create_module_dep(mod_added, document, suffix="_a")
document.wasGeneratedBy("module{}_a".format(mod_added.id),
"trial{}Execution".format(diff.trial2.id), None,
"module{}AddDep".format(mod_added.id),
[(provo.PROV_ROLE, "dependencyAddition")])
_create_module_dep(mod_removed, document, suffix="_r")
document.wasInvalidatedBy("module{}_r".format(mod_removed.id),
"trial{}Execution".format(diff.trial2.id), None,
"module{}RemoveDep".format(mod_removed.id),
[(provo.PROV_ROLE, "dependencyRemoval")])
document.wasRevisionOf("module{}_a".format(mod_added.id),
"module{}_r".format(mod_removed.id),
"trial{}Execution".format(diff.trial2.id), None, None, None,
[(provo.PROV_TYPE, "dependencyReplacement")])
def modification(graph: ProvDocument, package: CommitModelPackage, action: Modification) -> ProvDocument:
"""Add model for a modified file."""
file, file_version, previous_versions = action
author, commit = package.author, package.commit
graph.entity(*file)
graph.entity(*file_version)
graph.wasAttributedTo(file_version.id, author.id)
graph.wasGeneratedBy(file_version.id, commit.id)
graph.specializationOf(file_version.id, file.id)
for version in previous_versions:
graph.entity(*version)
graph.used(commit.id, version.id)
graph.wasRevisionOf(file_version.id, version.id)
graph.specializationOf(version.id, file.id)
return graph
def diff(diff: DiffModel, document: provo.ProvDocument):
print_msg(" Exporting environment conditions comparison")
added, removed, replaced = diff.environment
for env_attr in added: # type: EnvironmentAttr
_create_env_attr(document, env_attr, suffix="_a")
document.wasGeneratedBy(
"environmentAttribute{}_a".format(env_attr.id),
"trial{}Execution".format(diff.trial2.id), None,
"environmentAttribute{}AddAttr".format(env_attr.id),
[(provo.PROV_ROLE, "environmentAttributeAddition")])
for env_attr in removed: # type: EnvironmentAttr
_create_env_attr(document, env_attr, suffix="_r")
document.wasInvalidatedBy(
"environmentAttribute{}_r".format(env_attr.id),
"trial{}Execution".format(diff.trial2.id), None,
"environmentAttribute{}RemoveAttr".format(env_attr.id),
[(provo.PROV_ROLE, "environmentAttributeRemoval")])
for (attr_removed, attr_added) in replaced: # type: EnvironmentAttr
_create_env_attr(document, attr_added, suffix="_a")
document.wasGeneratedBy(
"environmentAttribute{}_a".format(attr_added.id),
"trial{}Execution".format(diff.trial2.id), None,
"environmentAttribute{}AddAttr".format(attr_added.id),
[(provo.PROV_ROLE, "environmentAttributeAddition")])
_create_env_attr(document, attr_removed, suffix="_r")
document.wasInvalidatedBy(
"environmentAttribute{}_r".format(attr_removed.id),
"trial{}Execution".format(diff.trial2.id), None,
"environmentAttribute{}RemoveAttr".format(attr_removed.id),
[(provo.PROV_ROLE, "environmentAttributeRemoval")])
document.wasRevisionOf(
"environmentAttribute{}_a".format(attr_added.id),
"environmentAttribute{}_r".format(attr_removed.id),
"trial{}Execution".format(diff.trial2.id), None, None, None,
[(provo.PROV_TYPE, "environmentAttributeReplacement")])
"prov:type": "file_version",
"new_path": "",
"old_path": ""
})
mod.entity("File Version N-1",
other_attributes={
"prov:type": "file_version",
"new_path": "",
"old_path": ""
})
mod.wasInformedBy("Commit", "Parent Commit")
mod.wasAssociatedWith("Commit", "Author")
mod.wasAssociatedWith("Commit", "Committer")
mod.used("Commit", "File Version N-1")
mod.wasGeneratedBy("File Version N", "Commit")
mod.wasRevisionOf("File Version N", "File Version N-1")
mod.specializationOf("File Version N", "File")
mod.specializationOf("File Version N-1", "File")
mod.wasAttributedTo("File Version N", "Author")
rem = ProvDocument()
rem.set_default_namespace("gitlab2prov:")
rem.activity("Commit",
other_attributes={
"prov:type": "commit",
"title": "",
"message": "",
"id": "",
"short_id": "",
"prov:startedAt": "",
"prov:endedAt": ""
