def test_check_on_inconsistent(self):
core = set(self.model.reactions)
inconsistent = set(
fluxanalysis.consistency_check(self.model,
core,
epsilon=0.001,
tfba=False,
solver=self.solver))
self.assertEqual(inconsistent, {'rxn_2'})
def test_check_on_inconsistent_with_thermodynamic_constraints(self):
self.model.remove_reaction('rxn_2')
core = self.model.reactions
inconsistent = set(
fluxanalysis.consistency_check(self.model,
core,
epsilon=0.001,
tfba=True,
solver=self.solver))
self.assertEqual(inconsistent, {'rxn_7', 'rxn_8'})
def test_check_on_inconsistent_with_thermodynamic_constraints(self):
self.model.remove_reaction('rxn_2')
core = self.model.reactions
inconsistent = set(fluxanalysis.consistency_check(
self.model, core, epsilon=0.001, tfba=True, solver=self.solver))
self.assertEqual(inconsistent, {'rxn_7', 'rxn_8'})
def test_check_on_inconsistent(self):
core = set(self.model.reactions)
inconsistent = set(fluxanalysis.consistency_check(
self.model, core, epsilon=0.001, tfba=False, solver=self.solver))
self.assertEqual(inconsistent, {'rxn_2'})