def test_CGM24_FullBody_noOptions_uncorrectLowerLimbMarker(self):
DATA_PATH = pyCGM2.TEST_DATA_PATH + "Scenarii\\different static and dynamic marker set\\CGM24-fullBody\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter=14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "PN07.vsk")
required_mp,optional_mp = vskTools.getFromVskSubjectMp(vsk, resetFlag=True)
settings = files.openFile(pyCGM2.PYCGM2_SETTINGS_FOLDER,"CGM2_4-pyCGM2.settings")
hjcMethod = settings["Calibration"]["HJC"]
translators = files.getTranslators(DATA_PATH,"CGM2_4.translators")
# if not translators: translators = settings["Translators"]
model,finalAcqStatic = cgm2_4.calibrate(DATA_PATH,
staticFilename,
translators,
settings,
required_mp,
optional_mp,
False,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
hjcMethod,
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
logging.info("Static Calibration -----> Done")
gaitFilename="gait1_noLASI.c3d"
mfpa = None
reconstructFilenameLabelled = gaitFilename
acqGait = cgm2_4.fitting(model,DATA_PATH, reconstructFilenameLabelled,
translators,
settings,
False,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Proximal,
displayCoordinateSystem=True)
assert model.m_bodypart == enums.BodyPart.UpperLimb
def test_sample0(self):
DATA_PATH = MAIN_PATH = pyCGM2.TEST_DATA_PATH + "GaitModels\CGM1\\fullBody-native-noOptions\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter = 14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "New Subject.vsk")
required_mp, optional_mp = vskTools.getFromVskSubjectMp(vsk,
resetFlag=True)
# calibration according CGM1
model, finalAcqStatic = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
# no fitting operation, only checking of forceplateAssembly
gaitFilename = "gait1.c3d"
acqGait = btkTools.smartReader(DATA_PATH + gaitFilename)
mfpa = None
mappedForcePlate = forceplates.matchingFootSideOnForceplate(acqGait,
mfpa=mfpa)
forceplates.addForcePlateGeneralEvents(acqGait, mappedForcePlate)
logging.warning("Manual Force plate assignment : %s" %
mappedForcePlate)
# assembly foot and force plate
modelFilters.ForcePlateAssemblyFilter(
model,
acqGait,
mappedForcePlate,
leftSegmentLabel="Left Foot",
rightSegmentLabel="Right Foot").compute(
pointLabelSuffix=pointSuffix)
testingUtils.plotComparisonOfPoint(acqGait, "RGroundReactionForce",
"test")
testingUtils.plotComparisonOfPoint(acqGait, "RGroundReactionMoment",
"test")
def test_vskFiles(self):
vskFile = vskTools.getVskFiles(pyCGM2.TEST_DATA_PATH +
"\\LowLevel\\IO\\Hanibal_files\\")
assert vskFile != False
vskTools.checkSetReadOnly(pyCGM2.TEST_DATA_PATH +
"\\LowLevel\\IO\\Hanibal_files\\PIG-KAD.vsk")
vskInstance = vskTools.Vsk(
pyCGM2.TEST_DATA_PATH +
"\\LowLevel\\IO\\Hanibal_files\\PIG-KAD.vsk")
def test_FullBody_noOptions(self):
DATA_PATH = MAIN_PATH = pyCGM2.TEST_DATA_PATH + "LowLevel\\uncropped data\\cgm1\\"
staticFilename = "static.c3d"
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT+"LowLevel\\uncropped data\\cgm1\\"
files.createDir(DATA_PATH_OUT)
markerDiameter=14
leftFlatFoot = True
rightFlatFoot = True
headStraight = True
pointSuffix = ""
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "New Subject.vsk")
required_mp,optional_mp = vskTools.getFromVskSubjectMp(vsk, resetFlag=True)
model,finalAcqStatic = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
# logging.info("Static Calibration -----> Done")
gaitFilename="gait1.c3d"
acqGait0 = btkTools.smartReader(DATA_PATH + gaitFilename)
trackingMarkers = model.getTrackingMarkers(acqGait0)
validFrames,vff,vlf = btkTools.findValidFrames(acqGait0,trackingMarkers)
mfpa = None
reconstructFilenameLabelled = gaitFilename
acqGait = cgm1.fitting(model,DATA_PATH, reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Proximal,
displayCoordinateSystem=True)
btkTools.smartWriter(acqGait, DATA_PATH_OUT+"//gait1-processed.c3d")
def test_CGM1_FullBody_noOptions_uncorrectUpperLimbMarker(self):
DATA_PATH = pyCGM2.TEST_DATA_PATH + "Scenarii\different static and dynamic marker set\CGM1-fullBody\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter = 14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "New Subject.vsk")
required_mp, optional_mp = vskTools.getFromVskSubjectMp(vsk,
resetFlag=True)
model, finalAcqStatic, error = cgm1.calibrate(
DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
LOGGER.logger.info("Static Calibration -----> Done")
# case 1 - one marker on the upper limb misses
gaitFilename = "gait1_noRFIN.c3d"
mfpa = None
reconstructFilenameLabelled = gaitFilename
acqGait, error = cgm1.fitting(model,
DATA_PATH,
reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Proximal,
displayCoordinateSystem=True)
assert model.m_bodypart == enums.BodyPart.FullBody
def test_CGM1_FullBody_noOptions_noFP(self):
DATA_PATH = pyCGM2.TEST_DATA_PATH + "GaitModels\CGM1\\fullBody-native-noOptions - noFP\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter=14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "New Subject.vsk")
required_mp,optional_mp = vskTools.getFromVskSubjectMp(vsk, resetFlag=True)
model,finalAcqStatic = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
# logging.info("Static Calibration -----> Done")
gaitFilename="gait1.c3d"
mfpa = None
reconstructFilenameLabelled = gaitFilename
acqGait = cgm1.fitting(model,DATA_PATH, reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Proximal,
displayCoordinateSystem=True)
btkTools.smartWriter(acqGait, "gait1-pyCGM2modelled.c3d")
def getEnfFiles(cls):
DATA_PATH ="C:\Users\HLS501\Documents\VICON DATA\pyCGM2-Data\Eclipse\Lecter\session\\"
vskFile = vskTools.getVskFiles(DATA_PATH)
sessionEnfFile = eclipse.getEnfFiles(DATA_PATH,enums.EclipseType.Session)
trialEnfFiles = eclipse.getEnfFiles(DATA_PATH,enums.EclipseType.Trial)
calib = eclipse.findCalibration(DATA_PATH)
motion = eclipse.findMotions(DATA_PATH)
kneeMotion = eclipse.findKneeMotions(DATA_PATH)
calibProcessingOnly = eclipse.findCalibration(DATA_PATH,ignoreSelect=False)
motionProcessingOnly = eclipse.findMotions(DATA_PATH,ignoreSelect=False)
kneeMotionProcessingOnly = eclipse.findKneeMotions(DATA_PATH,ignoreSelect=False)
motionClassified = eclipse.classifyEnfMotions(DATA_PATH,ignoreSelect=True)
motionClassifiedProcessingOnly = eclipse.classifyEnfMotions(DATA_PATH,ignoreSelect=False)
motionClassifiedProcessingOnly_TaskOnly = eclipse.classifyEnfMotions(DATA_PATH,ignoreSelect=False, criteria = ["Task"])
def test_FullBody_noOptions_global(self):
DATA_PATH = MAIN_PATH = pyCGM2.TEST_DATA_PATH + "GaitModels\\CGM1\\LowerLimb-medMed_Yprogression\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter = 14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "Subject.vsk")
required_mp, optional_mp = vskTools.getFromVskSubjectMp(vsk,
resetFlag=True)
model, finalAcqStatic = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
# logging.info("Static Calibration -----> Done")
gaitFilename = "gait1.Global.c3d"
mfpa = "RLX"
reconstructFilenameLabelled = gaitFilename
acqGait = cgm1.fitting(model,
DATA_PATH,
reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Global,
displayCoordinateSystem=True)
testingUtils.plotComparison_ForcePanel(acqGait, None, "test", "Left")
testingUtils.plotComparison_ForcePanel(acqGait, None, "test", "Right")
gaitFilename = "gait2.Global.c3d"
mfpa = "XLR"
reconstructFilenameLabelled = gaitFilename
acqGait = cgm1.fitting(model,
DATA_PATH,
reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Global,
displayCoordinateSystem=True)
testingUtils.plotComparison_ForcePanel(acqGait, None, "test", "Left")
testingUtils.plotComparison_ForcePanel(acqGait, None, "test", "Right")
def test_issue_signAbdAddOffset(self):
DATA_PATH = pyCGM2.TEST_DATA_PATH + "Issues\\StephenM\\signedAbdAdd-KadMed\\"
staticFilename = "Static.c3d"
acqStatic = btkTools.smartReader(str(DATA_PATH + staticFilename))
markerDiameter = 14
leftFlatFoot = True
rightFlatFoot = True
headStraight = True
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "Nick.vsk")
required_mp, optional_mp = vskTools.getFromVskSubjectMp(vsk,
resetFlag=True)
# required_mp={
# 'Bodymass' : 65.0,
# 'LeftLegLength' : 800.0,
# 'RightLegLength' : 800.0 ,
# 'LeftKneeWidth' : 120.0,
# 'RightKneeWidth' : 120.0,
# 'LeftAnkleWidth' : 100.0,
# 'RightAnkleWidth' : 100.0,
# 'LeftSoleDelta' : 0,
# 'RightSoleDelta' : 0,
# 'LeftShoulderOffset' : 40,
# 'LeftElbowWidth' : 74,
# 'LeftWristWidth' : 55 ,
# 'LeftHandThickness' : 34 ,
# 'RightShoulderOffset' : 40,
# 'RightElbowWidth' : 74,
# 'RightWristWidth' : 55 ,
# 'RightHandThickness' : 34}
#
# optional_mp={
# 'InterAsisDistance' : 0,#0,
# 'LeftAsisTrocanterDistance' : 0,#0,
# 'LeftTibialTorsion' : 0,#0,
# 'LeftThighRotation' : 0,#0,
# 'LeftShankRotation' : 0,#0,ipdb
# 'RightAsisTrocanterDistance' : 0,#0,
# 'RightTibialTorsion' : 0,#0,
# 'RightThighRotation' : 0,#0,
# 'RightShankRotation' : 0}
model, finalAcqStatic = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
testingUtils.test_offset(
model.mp_computed["LeftThighRotationOffset"],
acqStatic,
"LThighRotation",
decimal=1) # not enought accurate but unsignificant
testingUtils.test_offset(model.mp_computed["RightThighRotationOffset"],
acqStatic,
"RThighRotation",
decimal=1)
testingUtils.test_offset(model.mp_computed["LeftShankRotationOffset"],
acqStatic,
"LShankRotation",
decimal=1)
testingUtils.test_offset(model.mp_computed["RightShankRotationOffset"],
acqStatic,
"RShankRotation",
decimal=1)
testingUtils.test_offset(model.mp_computed["LeftTibialTorsionOffset"],
acqStatic,
"LTibialTorsion",
decimal=1)
testingUtils.test_offset(model.mp_computed["RightTibialTorsionOffset"],
acqStatic,
"RTibialTorsion",
decimal=1)
testingUtils.test_offset(model.mp_computed["LeftAnkleAbAddOffset"],
acqStatic,
"LAnkleAbAdd",
decimal=1)
testingUtils.test_offset(model.mp_computed["RightAnkleAbAddOffset"],
acqStatic,
"RAnkleAbAdd",
decimal=1)
testingUtils.test_offset(
model.mp_computed["LeftStaticPlantFlexOffset"],
acqStatic,
"LStaticPlantFlex",
decimal=1)
testingUtils.test_offset(
model.mp_computed["RightStaticPlantFlexOffset"],
acqStatic,
"RStaticPlantFlex",
decimal=1)
testingUtils.test_offset(model.mp_computed["LeftStaticRotOffset"],
acqStatic,
"LStaticRotOff",
decimal=1)
testingUtils.test_offset(model.mp_computed["RightStaticRotOffset"],
acqStatic,
"RStaticRotOff",
decimal=1)
def test_issue_jointForce_CGM24(self):
"""
synopsis : inverted sign of the x-component of the joint force with CGM1.1 to CGM2.4
"""
DATA_PATH = MAIN_PATH = pyCGM2.TEST_DATA_PATH + "Issues\\StephenM\\sign_jointForce_CGM24\\"
staticFilename = "FullBody CGM2 data Cal 01.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter = 14
leftFlatFoot = False
rightFlatFoot = False
headStraight = False
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "Nick.vsk")
required_mp, optional_mp = vskTools.getFromVskSubjectMp(vsk,
resetFlag=True)
settings = files.openFile(pyCGM2.PYCGM2_APPDATA_PATH,
"CGM2_4-pyCGM2.settings")
model, finalAcqStatic = cgm2_4.calibrate(DATA_PATH,
staticFilename,
None,
settings,
required_mp,
optional_mp,
True,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter, {
"Left": "Hara",
"Right": "Hara"
},
pointSuffix,
displayCoordinateSystem=True)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
# logging.info("Static Calibration -----> Done")
gaitFilename = "Capture 02.Distal.c3d"
mfpa = "R"
reconstructFilenameLabelled = gaitFilename
acqGait = cgm2_4.fitting(model,
DATA_PATH,
reconstructFilenameLabelled,
None,
settings,
True,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Distal,
displayCoordinateSystem=True)
testingUtils.plotComparisonOfPoint(acqGait,
"RAnkleForce",
"test",
title="RAnkleForce PiG - CGM24")
testingUtils.plotComparisonOfPoint(acqGait,
"RKneeForce",
"test",
title="RKneeForce PiG - CGM24")
testingUtils.plotComparisonOfPoint(acqGait,
"RHipForce",
"test",
title="RHipForce PiG - CGM24")
def test_FullBody_noOptions(self):
DATA_PATH = pyCGM2.TEST_DATA_PATH + "GaitModels\CGM1\\fullBody-native-Options\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(DATA_PATH + staticFilename)
markerDiameter=14
leftFlatFoot = True
rightFlatFoot = True
headStraight = True
pointSuffix = "test"
vskFile = vskTools.getVskFiles(DATA_PATH)
vsk = vskTools.Vsk(DATA_PATH + "New Subject.vsk")
required_mp,optional_mp = vskTools.getFromVskSubjectMp(vsk, resetFlag=True)
model,finalAcqStatic,error = cgm1.calibrate(DATA_PATH,
staticFilename,
None,
required_mp,
optional_mp,
leftFlatFoot,
rightFlatFoot,
headStraight,
markerDiameter,
pointSuffix,
displayCoordinateSystem=True)
testingUtils.test_offset(model.mp_computed["LeftThighRotationOffset"],acqStatic,"LThighRotation", decimal=3)
testingUtils.test_offset(model.mp_computed["RightThighRotationOffset"],acqStatic,"RThighRotation", decimal=3)
testingUtils.test_offset(model.mp_computed["LeftShankRotationOffset"],acqStatic,"LShankRotation", decimal=3)
testingUtils.test_offset(model.mp_computed["RightShankRotationOffset"],acqStatic,"RShankRotation", decimal=3)
testingUtils.test_offset(model.mp_computed["LeftTibialTorsionOffset"],acqStatic,"LTibialTorsion", decimal=3)
testingUtils.test_offset(model.mp_computed["RightTibialTorsionOffset"],acqStatic,"RTibialTorsion", decimal=3)
testingUtils.test_offset(model.mp_computed["LeftAnkleAbAddOffset"],acqStatic,"LAnkleAbAdd", decimal=3)
testingUtils.test_offset(model.mp_computed["RightAnkleAbAddOffset"],acqStatic,"RAnkleAbAdd", decimal=3)
testingUtils.test_offset(model.mp_computed["LeftStaticPlantFlexOffset"],acqStatic,"LStaticPlantFlex", decimal=3)
testingUtils.test_offset(model.mp_computed["RightStaticPlantFlexOffset"],acqStatic,"RStaticPlantFlex", decimal=3)
testingUtils.test_offset(model.mp_computed["LeftStaticRotOffset"],acqStatic,"LStaticRotOff", decimal=3)
testingUtils.test_offset(model.mp_computed["RightStaticRotOffset"],acqStatic,"RStaticRotOff", decimal=3)
np.testing.assert_equal(model.getSegment("Left Thigh").getReferential("TF").static.getNode_byLabel("LHJC").m_desc ,"Davis")
np.testing.assert_equal(model.getSegment("Right Thigh").getReferential("TF").static.getNode_byLabel("RHJC").m_desc ,"Davis")
np.testing.assert_equal(model.getSegment("Left Thigh").getReferential("TF").static.getNode_byLabel("LKJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Right Thigh").getReferential("TF").static.getNode_byLabel("RKJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Left Shank").getReferential("TF").static.getNode_byLabel("LKJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Right Shank").getReferential("TF").static.getNode_byLabel("RKJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Left Shank").getReferential("TF").static.getNode_byLabel("LAJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Right Shank").getReferential("TF").static.getNode_byLabel("RAJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Left Foot").getReferential("TF").static.getNode_byLabel("LAJC").m_desc ,"Chord")
np.testing.assert_equal(model.getSegment("Right Foot").getReferential("TF").static.getNode_byLabel("RAJC").m_desc ,"Chord")
testingUtils.test_point(finalAcqStatic,"LPelvisAngles","LPelvisAngles_test",decimal = 3)
testingUtils.test_point(finalAcqStatic,"RPelvisAngles","RPelvisAngles_test",decimal = 3)
testingUtils.test_point(finalAcqStatic,"LHipAngles","LHipAngles_test",decimal = 3)
testingUtils.test_point(finalAcqStatic,"LKneeAngles","LKneeAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LAnkleAngles","LAnkleAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RHipAngles","RHipAngles_test",decimal = 3)
testingUtils.test_point(finalAcqStatic,"RKneeAngles","RKneeAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RAnkleAngles","RAnkleAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LFootProgressAngles","LFootProgressAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RFootProgressAngles","RFootProgressAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LThoraxAngles","LThoraxAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RThoraxAngles","RThoraxAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LSpineAngles","LSpineAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RSpineAngles","RSpineAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LShoulderAngles","LShoulderAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RShoulderAngles","RShoulderAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LElbowAngles","LElbowAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"RElbowAngles","RElbowAngles_test",decimal = 2)
testingUtils.test_point(finalAcqStatic,"LHeadAngles","LHeadAngles_test",decimal = 3)
testingUtils.test_point(finalAcqStatic,"RHeadAngles","RHeadAngles_test",decimal = 3)
# btkTools.smartWriter(finalAcqStatic, str( staticFilename[:-4]+"-pyCGM2modelled.c3d"))
# LOGGER.logger.info("Static Calibration -----> Done")
gaitFilename="gait1.c3d"
mfpa = None
reconstructFilenameLabelled = gaitFilename
acqGait,error = cgm1.fitting(model,DATA_PATH, reconstructFilenameLabelled,
None,
markerDiameter,
pointSuffix,
mfpa,
enums.MomentProjection.Proximal,
displayCoordinateSystem=True)
testingUtils.test_point(acqGait,"LPelvisAngles","LPelvisAngles_test",decimal = 3)
testingUtils.test_point(acqGait,"RPelvisAngles","RPelvisAngles_test",decimal = 3)
testingUtils.test_point(acqGait,"LHipAngles","LHipAngles_test",decimal = 3)
testingUtils.test_point(acqGait,"LKneeAngles","LKneeAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LAnkleAngles","LAnkleAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RHipAngles","RHipAngles_test",decimal = 3)
testingUtils.test_point(acqGait,"RKneeAngles","RKneeAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RAnkleAngles","RAnkleAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LFootProgressAngles","LFootProgressAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RFootProgressAngles","RFootProgressAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LThoraxAngles","LThoraxAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RThoraxAngles","RThoraxAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LSpineAngles","LSpineAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RSpineAngles","RSpineAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LShoulderAngles","LShoulderAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RShoulderAngles","RShoulderAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LElbowAngles","LElbowAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"RElbowAngles","RElbowAngles_test",decimal = 2)
testingUtils.test_point(acqGait,"LHeadAngles","LHeadAngles_test",decimal = 3)
testingUtils.test_point(acqGait,"RHeadAngles","RHeadAngles_test",decimal = 3)
# testingUtils.test_point(acqGait,"LWristAngles","LWristAngles_test",decimal = 3) fail on z!
# testingUtils.test_point(acqGait,"RWristAngles","RWristAngles_test",decimal = 3) fail on Z!
# testingUtils.test_point(acqGait,"CentreOfMass","CentreOfMass_test",decimal = 3)
btkTools.smartAppendPoint(acqGait,"headCOM_py",model.getSegment("Head").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"ThoraxCOM_py",model.getSegment("Thorax").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"LhumCOM_py",model.getSegment("Left UpperArm").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"LforeCom_py",model.getSegment("Left ForeArm").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"LhandCom_py",model.getSegment("Left Hand").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"RhumCOM_py",model.getSegment("Right UpperArm").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"RforeCom_py",model.getSegment("Right ForeArm").getComTrajectory())
btkTools.smartAppendPoint(acqGait,"RhandCom_py",model.getSegment("Right Hand").getComTrajectory())
