def setUp(self):
# create a sample image in memory
self.su1 = u'kanso <Diagnosis>**diabetes**</Diagnosis> utesl\xf6t eller diabetes men inte s\xe4kert. Vi siktar p\xe5 en r\xf6ntgenkontroll. kan det vara nej panik\xe5ngesten\n?'
self.su2 = u'IMPRESSION: 1. LIMITED STUDY DEMONSTRATING NO GROSS EVIDENCE OF SIGNIFICANT PULMONARY EMBOLISM.'
self.su3 = u'This is a sentence that does not end with a number. But this sentence ends with 1. So this should be recognized as a third sentence.'
self.su4 = u'This is a sentence with a numeric value equal to 1.43 and should not be split into two parts.'
self.items = {"targets":[ CI.create_ConTextItem([u"pulmonary embolism",
u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""",
""]),
],
"modifiers":[CI.create_ConTextItem(["no gross evidence of",
"PROBABLE_NEGATED_EXISTENCE",
"",
"forward"])]}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
self.ti0 = TI.create_tagItem(self.ci0,(20,25),"Brian Chapman",0)
self.ti1 = TI.create_tagItem(self.ci0,( 5,30),"Wendy Chapman",1)
self.markup = nx.DiGraph()
self.markup.add_nodes_from([self.ti0,self.ti1])
def setUp(self):
# create a sample image in memory
self.su1 = u'kanso <Diagnosis>**diabetes**</Diagnosis> utesl\xf6t eller diabetes men inte s\xe4kert. Vi siktar p\xe5 en r\xf6ntgenkontroll. kan det vara nej panik\xe5ngesten\n?'
self.su2 = u'IMPRESSION: 1. LIMITED STUDY DEMONSTRATING NO GROSS EVIDENCE OF SIGNIFICANT PULMONARY EMBOLISM.'
self.su3 = u'This is a sentence that does not end with a number. But this sentence ends with 1. So this should be recognized as a third sentence.'
self.su4 = u'This is a sentence with a numeric value equal to 1.43 and should not be split into two parts.'
self.items = {
"targets": [
CI.create_ConTextItem([
u"pulmonary embolism", u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""", ""
])
],
"modifiers": [
CI.create_ConTextItem([
"no gross evidence of", "PROBABLE_NEGATED_EXISTENCE", "",
"forward"
])
]
}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
self.ti0 = TI.create_tagItem(self.ci0, (20, 25), "Brian Chapman", 0)
self.ti1 = TI.create_tagItem(self.ci0, (5, 30), "Wendy Chapman", 1)
self.markup = nx.DiGraph()
self.markup.add_nodes_from([self.ti0, self.ti1])
self.cd = CD.ConTextDocument()
def test_o1_encompasses_o2(self):
ti0 = TI.create_tagItem(self.ci0,(20,25),"Brian Chapman",0)
ti1 = TI.create_tagItem(self.ci0,( 5,30),"Wendy Chapman",1)
assert TI.o1_encompasses_o2(ti1,ti0)
assert not TI.o1_encompasses_o2(ti0,ti1)
def test_limitCategoryScopeBackward(self):
ti0 = TI.create_tagItem(self.ci0,(20,30),"Brian Chapman",0)
ti1 = TI.create_tagItem(self.ci0,( 5,15),"Wendy Chapman",1)
assert TI.lessthan(ti1,ti0)
assert not TI.lessthan(ti0,ti1)
def test_create_tagItem(self):
ti = TI.create_tagItem(self.ci0,(20,30),"Brian Chapman",0)
assert ti.span == (20,30)
def test_limitCategoryScopeBackward(self):
ti0 = TI.create_tagItem(self.ci0, (20, 30), "Brian Chapman", 0)
ti1 = TI.create_tagItem(self.ci0, (5, 15), "Wendy Chapman", 1)
assert TI.lessthan(ti1, ti0)
assert not TI.lessthan(ti0, ti1)
def test_create_tagItem(self):
ti = TI.create_tagItem(self.ci0, (20, 30), "Brian Chapman", 0)
assert ti.span == (20, 30)
def test_o1_encompasses_o2(self):
ti0 = TI.create_tagItem(self.ci0, (20, 25), "Brian Chapman", 0)
ti1 = TI.create_tagItem(self.ci0, (5, 30), "Wendy Chapman", 1)
assert TI.o1_encompasses_o2(ti1, ti0)
assert not TI.o1_encompasses_o2(ti0, ti1)