Beispiel #1
0
    def setUpClass(cls):
        aspec = AutomatedRunSpec()
        aspec.mass_spectrometer = 'jan'
        aspec.labnumber = '17005'
        aspec.aliquot = 95

        a = AutomatedRun()
        a.script_info.measurement_script_name = 'unknown_peak_hop'
        s = ArgusSpectrometerManager()
        ion = IonOpticsManager(spectrometer=s.spectrometer)

        s.load(db_mol_weights=False)
        a.spectrometer_manager = s
        a.ion_optics_manager = ion
        a.isotope_group = ArArAge()
        a.isotope_group.j = ufloat(0.001, 1e-6)

        a._alive = True
        a.uuid = '12345-ABCDE'

        a.spec = aspec
        a._measured = True
        a._save_enabled = True

        cls.arun = a
Beispiel #2
0
    def setUpClass(cls):
        aspec = AutomatedRunSpec()
        aspec.mass_spectrometer = 'jan'
        aspec.labnumber = '17005'
        aspec.aliquot = 95

        a = AutomatedRun()
        a.script_info.measurement_script_name = 'unknown_peak_hop'
        s = ArgusSpectrometerManager()
        ion = IonOpticsManager(spectrometer=s.spectrometer)

        s.load(db_mol_weights=False)
        a.spectrometer_manager = s
        a.ion_optics_manager = ion
        a.isotope_group = ArArAge()
        a.isotope_group.j=ufloat(0.001, 1e-6)

        a._alive = True
        a.uuid = '12345-ABCDE'

        a.spec = aspec
        a._measured = True
        a._save_enabled = True

        cls.arun = a
Beispiel #3
0
    def setUpClass(cls):
        aspec = AutomatedRunSpec()
        aspec.mass_spectrometer = 'jan'
        aspec.labnumber = '17005'
        aspec.aliquot = 82
        aspec.syn_extraction='test'


        a = AutomatedRun()
        a.script_info.measurement_script_name = 'unknown'
        a.script_info.extraction_script_name = 'pause'

        s = ArgusSpectrometerManager()
        ion = IonOpticsManager(spectrometer=s.spectrometer)

        s.load()
        a.spectrometer_manager = s
        a.ion_optics_manager = ion
        a.isotope_group = ArArAge()

        a._alive = True
        a.uuid = '12345-ABCDE'

        a.spec = aspec
        a._measured = True
        a.persister.save_enabled = True
        a.persister.datahub=dh=Datahub(bind_mainstore=False)
        dh.mainstore.db.kind='mysql'
        dh.mainstore.db.username='******'
        dh.mainstore.db.name='pychrondata_dev'
        dh.mainstore.db.password='******'
        dh.mainstore.db.connect()


        cls.arun = a
Beispiel #4
0
    def setUpClass(cls):
        aspec = AutomatedRunSpec()
        aspec.mass_spectrometer = 'jan'
        aspec.labnumber = '17005'
        aspec.aliquot = 82

        a = AutomatedRun()
        a.script_info.measurement_script_name = 'unknown'
        s = SpectrometerManager()
        ion = IonOpticsManager(spectrometer=s.spectrometer)

        s.load(db_mol_weights=False)
        a.spectrometer_manager = s
        a.ion_optics_manager = ion
        a.arar_age = ArArAge()

        a._alive = True
        a.uuid = '12345-ABCDE'

        a.spec = aspec
        a._measured = True
        a._save_enabled = True

        cls.arun = a