def test_external_run(self):
E = ExternalAnalysis('bash <INPUTFILE>',
self.test_file, {
'mytag': 'this_is_the_output',
'outputfile': 'pycmbstestfile.txt'
},
output_directory='./test/nothing')
E.run()
self.assertTrue(os.path.exists('./test/nothing/pycmbstestfile.txt'))
os.remove('./test/nothing/pycmbstestfile.txt')
os.system('rm -rf ./test')
def test_external_create_script(self):
E = ExternalAnalysis('python <INPUTFILE>', self.test_file, {'mytag':'this_is_the_output', 'outputfile':'pycmbstestfile.txt'}, output_directory='./test/nothing')
E._create_script()
self.assertTrue(os.path.exists('./test/nothing/' + self.test_file))
o = open('./test/nothing/' + self.test_file, 'r')
l = o.readline()
self.assertEqual(l, '#This is a testfile\n')
l = o.readline()
self.assertEqual(l, 'echo this_is_the_output\n')
l = o.readline()
self.assertEqual(l, 'touch pycmbstestfile.txt')
def test_external_output_dir(self):
E = ExternalAnalysis('python <INPUTFILE>',
self.test_file, {'nothing': 'second'},
output_directory='./test/nothing')
self.assertEqual(E.output_directory, './test/nothing/')
self.assertTrue(os.path.exists('./test/nothing'))
os.system('rm -rf ./test')
def test_external_create_script(self):
E = ExternalAnalysis('python <INPUTFILE>',
self.test_file, {
'mytag': 'this_is_the_output',
'outputfile': 'pycmbstestfile.txt'
},
output_directory='./test/nothing')
E._create_script()
self.assertTrue(os.path.exists('./test/nothing/' + self.test_file))
o = open('./test/nothing/' + self.test_file, 'r')
l = o.readline()
self.assertEqual(l, '#This is a testfile\n')
l = o.readline()
self.assertEqual(l, 'echo this_is_the_output\n')
l = o.readline()
self.assertEqual(l, 'touch pycmbstestfile.txt')
def test_external_run(self):
E = ExternalAnalysis('bash <INPUTFILE>', self.test_file, {'mytag':'this_is_the_output', 'outputfile':'pycmbstestfile.txt'}, output_directory='./test/nothing')
E.run()
self.assertTrue(os.path.exists('./test/nothing/pycmbstestfile.txt'))
os.remove('./test/nothing/pycmbstestfile.txt')
os.system('rm -rf ./test')
def test_external_missing_template(self):
with self.assertRaises(ValueError):
E = ExternalAnalysis('python <INPUTFILE>',
'notemplate.txt', {'nothing': 'first'},
output_directory='./test/nothing')
def test_external_invalid_executable(self):
with self.assertRaises(ValueError):
E = ExternalAnalysis('python ', self.test_file,
{'nothing': 'first'})