def test_sweep_table():
nwb_interpreter = NWBModelInterpreter(os.path.join(HERE, 'nwb_files', 'pynwb_test_files', 'test_SweepTable.nwb'))
geppetto_model = nwb_interpreter.create_model()
import_main_type(geppetto_model, nwb_interpreter)
var = pointer_utility.find_variable_from_path(geppetto_model, 'nwbfile.sweep_table')
assert type(var.types[0]) == CompositeType
var = pointer_utility.find_variable_from_path(geppetto_model, 'nwbfile.sweep_table.colnames')
assert type(var.types[0]) == SimpleArrayType
colnames = var.initialValues[0].value
assert type(colnames) == StringArray
assert len(colnames.elements) == 2
var = pointer_utility.find_variable_from_path(geppetto_model, 'nwbfile.sweep_table.columns')
assert type(var.types[0]) == CompositeType
variables = var.types[0].variables
assert len(variables) == 3
assert variables[1].name == colnames.elements[0]
assert variables[2].name == colnames.elements[1]
references_time_series = variables[1].initialValues[0].value.elements
assert len(references_time_series) == 1
assert type(references_time_series[0]) == Pointer
assert references_time_series[0].path == 'nwbfile.acquisition.pcs'
def test_importValue(nwbfile):
nwb_interpreter = NWBModelInterpreter(nwbfile)
# Create the model
model = nwb_interpreter.create_model()
import_main_type(model, nwb_interpreter)
# Call import value
var_to_import = pointer_utility.find_variable_from_path(model, 'nwbfile.acquisition.t1.data')
value = var_to_import.initialValues[0].value
assert type(value), ImportValue
value = nwb_interpreter.importValue(value)
#Test
from pygeppetto.model.values import TimeSeries
assert type(value) == TimeSeries
assert len(value.value) == 100
assert value.value[0] == 0.0
var_to_import = pointer_utility.find_variable_from_path(model, 'nwbfile.acquisition.t1.timestamps')
value = var_to_import.initialValues[0].value
assert type(value), ImportValue
value = nwb_interpreter.importValue(value)
assert type(value) == TimeSeries
assert len(value.value) == 100
assert value.value[0] == 0.0
assert value.value[1] == 1.0
var_to_import = pointer_utility.find_variable_from_path(model, 'nwbfile.acquisition.t2.timestamps')
value = var_to_import.initialValues[0].value
assert type(value), ImportValue
value = nwb_interpreter.importValue(value)
assert type(value) == TimeSeries
assert len(value.value) == 100
assert value.value[0] == 0.0
assert value.value[1] == 1.0
def test_importType(nwbfile):
nwb_interpreter = NWBModelInterpreter(nwbfile)
geppetto_model = nwb_interpreter.create_model()
assert len(geppetto_model.variables) == 1
variable_type = geppetto_model.variables[0].types[0]
assert variable_type.eContainer() == nwb_interpreter.library
typename = 'typename'
geppetto_model_access = GeppettoModelAccess(geppetto_model)
imported_type = nwb_interpreter.importType('DUMMY', typename,
variable_type.eContainer(),
geppetto_model_access)
var_names = [var.name for var in imported_type.variables]
assert imported_type.id
assert imported_type.name
assert 'acquisition' in var_names
assert 'stimulus' in var_names
assert len(imported_type.variables[0].types) == 1
geppetto_model_access.swap_type(variable_type, imported_type)
var = pointer_utility.find_variable_from_path(geppetto_model,
'nwbfile.acquisition')
variable_type = var.types[0]
assert len(variable_type.variables) == 4
assert isinstance(variable_type, CompositeType)
assert var.name == 'acquisition'
assert variable_type.name == 'LabelledDict'
var = pointer_utility.find_variable_from_path(geppetto_model,
'nwbfile.acquisition.t1')
variable_type = var.types[0]
assert isinstance(variable_type, CompositeType)
assert var.name == 't1'
assert variable_type.name == 'TimeSeries'
var = pointer_utility.find_variable_from_path(
geppetto_model, 'nwbfile.acquisition.t1.data')
variable_type = var.types[0]
assert isinstance(variable_type, StateVariableType)
assert var.id == 'data'